Hi Derek - this is strange. The dev and 5.3 version of freeview should display them differently. Can you send me one of those mean.txt files?
a.y
On Wed, 6 Jul 2016, Derek Pisner wrote:
Hi Anastasia,
This occurs for me on both stable and dev versions of freview and trac-all -stat
-Derek ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Anastasia Yendiki [ayendiki@nmr.mgh.harvard.edu] Sent: Monday, July 04, 2016 12:47 AM To: Freesurfer support list Subject: Re: [Freesurfer] TRACULA group stats visualization
Hi Derek - Are you by any chance using the dev version of freeview?
a.y
On Fri, 1 Jul 2016, Derek Pisner wrote:
Dear Anastasia, I am running into an issue with the trac-all -stat option on our longitudinal TRACULA data.
Everything runs smoothly through all earlier stages, and I checked individual subjects' merged outputs in freeview with -tv mode. Everything looks fine.
Also, then when I run trac-all -c dmric_config -stat, everything finishes without error.
But then when I open the results with the command: freeview -v $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz -w /data/blt/TRACULA/tractography_output/stats.long/*.path.mean.txt
I get the image seen in the attached .png file. Any idea what might be causing this?
Many thanks in advance for you help.
Best, Derek
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