I tired setenv UNPACK_MGH_DTI 0 but that unfortunately did not work. I am still getting the same error. unpacking in stable3 seems to work though. Thanks! Akram.
On Tue, 4 Sep 2007, Doug Greve wrote:
This might be the same problem. Try
setenv UNPACK_MGH_DTI 0
and then unpack. I'll take a look when I'm back next week.
doug
On Tue, 4 Sep 2007, Akram Bakkour wrote:
when I unpack a single run I get an error which I've never encountered before. I get the same error in std and dev
cd /space/madrc/1/users/MADRC_ARCHIVE/MGH_MADRC_ARCHIVE/MGH_MADRC_ARCHIVE_BAY4
unpacksdcmdir -src 08242007_4TT_clindem93/dicom -targ 08242007_4TT_clindem93/raw -run 15 MEMPRAGE mgz MEMPRAGE.mgz
here is the end of the output
Run 15 ----------------------------------------- Tue Sep 4 11:52:48 EDT 2007 15 MEMPRAGE mgz MEMPRAGE.mgz mri_convert 08242007_4TT_clindem93/dicom/00140001 08242007_4TT_clindem93/raw/MEMPRAGE/015/MEMPRAGE.mgz --sdcmlist 08242007_4TT_clindem93/raw/MEMPRAGE/015/flf -ot mgz --nspmzeropad 3 --in_type siemens_dicom ERROR: mri_convert child killed: segmentation violation
when I run
mri_convert 08242007_4TT_clindem93/dicom/00140001 08242007_4TT_clindem93/raw/MEMPRAGE/015/MEMPRAGE.mgz --sdcmlist 08242007_4TT_clindem93/raw/MEMPRAGE/015/flf -ot mgz --nspmzeropad 3 --in_type siemens_dicom
I get this
ERROR: cannot extract sDiffusion.alBValue[1] from 08242007_4TT_clindem93/dicom/00140001 Segmentation fault
Any suggestions? Thanks! Akram.