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I am getting this error near the tail of the 7.1.0 recon-all.log file just before exit: ERROR: find_corresponding_center_FSformat did not complete successfully!
At this link from May 13: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg66255.html I see that you have posted in reference to a similar question: https://gate.nmr.mgh.harvard.edu/safelinks/greve/find_corresponding_center_F...
If this is different from the 7.1.0 distribution's file in the matlab directory May 11 10:04 find_corresponding_center_FSformat.m please let me know what authentication login/password combination is needed to access this to see if it will fix my errors.
Is this file updated in the newer 7.1.1?
Thanks,
Kathy
Douglas N. Greve Mon, 19 Oct 2020 07:42:01 -0700 Can you send the recon-all.log file?
______________________________________ From: Kathy L. Pearson kathy.pearson@colorado.edu Sent: Friday, October 9, 2020 10:47 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: surf pial_lgi not created in version 7.1.0
No, it does not exist, and my question is why not in 7.1.0 when it is created with the same two commands in 5.3.0?
Thanks,
Kathy
Douglas N. Greve Fri, 09 Oct 2020 05:49:32 -0700 does that file exist?
________________________________________ From: Kathy L. Pearson Sent: Thursday, October 8, 2020 11:55 AM To: freesurfer@nmr.mgh.harvard.edu Subject: surf pial_lgi not created in version 7.1.0
In freesurfer version 5.3.0, I can successfully run: recon-all -autorecon-all -mprage -s $subj -qcache -localGI recon-all -s $subj -qcache -measure pial_lgi
However, the same commands with 7.1.0 give an error after this last of a number of generated statements and no surf/*pial_lgi output: mris_preproc --s 147608 --hemi lh --meas pial_lgi --target fsaverage --out lh.pial_lgi.fsaverage.mgh nsubjects = 1 ERROR: cannot find subjects/147608/surf/lh.pial_lgi
Is a new command needed for version 7.1.0?
Thanks,
Kathy Pearson