freesurfers,
i have a question about how t-tests are computed in fsfast.
so t = ces/sqrt(cesvar), but how exactly is cesvar calculated?
i thought it would be: cesvar = variance_of_residual * c*(X' * X)^-1*c' where X is the stim matrix and c is the contrast vector and ' denotes transpose
two questions:
1. i tried computing cesvar myself, but it is not the equation above (for the one subject i was playing with, cesvar was ~1.5x the above equation). what is the equation that is used?
2. intuitively, the second half of that [ c*(X' * X)^-1*c ] penalizes for correlations in your stimulus matrix, particularly for those relevant to your contrast. is that a good way to think about it?
thanks in advance!
alex