Hi Martin, Could you give more details? Which version of mri-cvs-register are you using? Was there a log file that you could share also? Thanks, Lilla ------Original Message------ From: Martin Kavec To: Freesurfer mailing list To: Lilla Zollei Subject: mri_cvs_register can not find Sent: Nov 4, 2011 03:44
Hi all,
I am trying to run mri_cvs_register but for some reasons it always terminates with:
ERROR: Can not find or read $SUBJECTS_DIR/MY_SUBJECTS/cvs/combined_tocvs_avg35__elreg_aseg.m3z
My command is as follows:
mri_cvs_register --mov MY_SUBJECT
Indeed the file is not there, but another one with the exactly the same name, but different suffix .tm3d is there.
Anybody encountered similar problem? Any idea what can be wrong?
Thanks in advance,
Martin
Sent via BlackBerry by AT&T
Hi Lilla,
I am using v 1.15.2.9 on 64-bit Gentoo Linux running inside vmware virtual machine with 15GB of allocated RAM and 4 cores.
I can share also the log file, but it will take a while to get it out of the vmware VM. I will send it later today.
Thanks a lot and best regards,
Martin
On Fri, Nov 4, 2011 at 12:40 PM, lzollei@nmr.mgh.harvard.edu wrote:
Hi Martin, Could you give more details? Which version of mri-cvs-register are you using? Was there a log file that you could share also? Thanks, Lilla ------Original Message------ From: Martin Kavec To: Freesurfer mailing list To: Lilla Zollei Subject: mri_cvs_register can not find Sent: Nov 4, 2011 03:44
Hi all,
I am trying to run mri_cvs_register but for some reasons it always terminates with:
ERROR: Can not find or read $SUBJECTS_DIR/MY_SUBJECTS/cvs/combined_tocvs_avg35__elreg_aseg.m3z
My command is as follows:
mri_cvs_register --mov MY_SUBJECT
Indeed the file is not there, but another one with the exactly the same name, but different suffix .tm3d is there.
Anybody encountered similar problem? Any idea what can be wrong?
Thanks in advance,
Martin
Sent via BlackBerry by AT&T
Hi Lilla,
it seems that my linux system was not in consistent state. After running some sanity checks and repairing some findings, the mri_cvs_register is able to continue beyond the point where it used crashed before.
Thanks,
Martin
On Fri, Nov 4, 2011 at 12:40 PM, lzollei@nmr.mgh.harvard.edu wrote:
Hi Martin, Could you give more details? Which version of mri-cvs-register are you using? Was there a log file that you could share also? Thanks, Lilla ------Original Message------ From: Martin Kavec To: Freesurfer mailing list To: Lilla Zollei Subject: mri_cvs_register can not find Sent: Nov 4, 2011 03:44
Hi all,
I am trying to run mri_cvs_register but for some reasons it always terminates with:
ERROR: Can not find or read $SUBJECTS_DIR/MY_SUBJECTS/cvs/combined_tocvs_avg35__elreg_aseg.m3z
My command is as follows:
mri_cvs_register --mov MY_SUBJECT
Indeed the file is not there, but another one with the exactly the same name, but different suffix .tm3d is there.
Anybody encountered similar problem? Any idea what can be wrong?
Thanks in advance,
Martin
Sent via BlackBerry by AT&T
freesurfer@nmr.mgh.harvard.edu