Hello Freesurfer experts,
I am a beginner in using Freesurfer.
I want to make a figure illustrates a specific area of ROIs (e.g., lh. hippocampus). How can I visulaize the Freesurfer definded ROIs?
Thanks in advance!
Try running mri_binarize with the --match option. The match value should be the id number for your ROI as defined in $FREESURFER_HOME/FreeSurferColorLUT.txt (eg, left hippo is 17). You can then load this as a segmentation or as an overlay in tkmedit. doug
Jade wrote:
Hello Freesurfer experts,
I am a beginner in using Freesurfer.
I want to make a figure illustrates a specific area of ROIs (e.g., lh. hippocampus). How can I visulaize the Freesurfer definded ROIs?
Thanks in advance!
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Jade,
This page can give you some other ideas:
http://brainybehavior.com/neuroimaging/2010/06/saving-individual-labels-from... Greetings,
Jacek Jońca-Jasiński
[cid:image001.png@01CC9B1F.DE5CB1D0]
Jacek Jońca-Jasiński, Ph.D. | The Graduate School | Texas Tech University Holden Hall Room 03 | Box 1030 | Lubbock, TX 79409-1030 ph.: 806.742.2787 | fax: 806.742.4038 | http://www.gradschool.ttu.edu
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From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Jade Sent: Friday, November 04, 2011 4:22 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Visulaization of FreeSurfer-defined ROI
Hello Freesurfer experts,
I am a beginner in using Freesurfer.
I want to make a figure illustrates a specific area of ROIs (e.g., lh. hippocampus). How can I visulaize the Freesurfer definded ROIs?
Thanks in advance!
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Jade -
Jonca, Jacek