After fixing the Talairach registration, you need to rerun the whole recon-all process. The old files will be overwritten. recon-all -all -s <subjectID>

And after adding control points, you need to run,

recon-all -autorecon2-cp -autorecon3 -s <subjectID>

Sita.

On Thu, 16 Jul 2009, Ritobrato Datta wrote:

Hello all,

I ran

recon-all -autorecon-all -s <subjid>

After it ran all the way through, I ran

tkregister2 --mgz --s <subjid> --fstal --surf orig

and saved everything with the SAVE REG button in the tkregister2 toolbar.

Since I initially ran all the steps before the talairach touch-ups, what do I run to re-process the data and re-write with the new talairach modifications ? Do I have to use ' -force ' with the command ?

I have a same question for the step, Using Control Points to Fix Intensity Normalization. What command do I run after I am done adding control points ?

Thanks

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