After fixing the Talairach registration, you need to rerun the whole recon-all process. The old files will be overwritten. recon-all -all -s <subjectID>
And after adding control points, you need to run,
recon-all -autorecon2-cp -autorecon3 -s <subjectID>
Sita.
On Thu, 16 Jul 2009, Ritobrato Datta wrote:
Hello all,
I ran
recon-all -autorecon-all -s <subjid>
After it ran all the way through, I ran
tkregister2 --mgz --s <subjid> --fstal --surf orig
and saved everything with the SAVE REG button in the tkregister2 toolbar.
Since I initially ran all the steps before the talairach touch-ups, what do I run to re-process the data and re-write with the new talairach modifications ? Do I have to use ' -force ' with the command ?
I have a same question for the step, Using Control Points to Fix Intensity Normalization. What command do I run after I am done adding control points ?
Thanks
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