External Email - Use Caution
Hello,
When I use the command recon-all -autorecon2-wm -subjid ${tmp_subj} -noaseg -xopts-use I only get ?h.white.K and ?h.white.H files, but not the ?h.white file that I need for mri_vol2surf script (so it exits with error). What am I doing wrong?
Thank you
You can find information about recon-all process here https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all
Add '-finalsurfs' to you recon-all command line options.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Faraz Yazdanibanafshedaragh Sent: Wednesday, February 15, 2023 3:58 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] recon-all does not produce ?h.white files
External Email - Use Caution Hello,
When I use the command recon-all -autorecon2-wm -subjid ${tmp_subj} -noaseg -xopts-use I only get ?h.white.K and ?h.white.H files, but not the ?h.white file that I need for mri_vol2surf script (so it exits with error). What am I doing wrong?
Thank you
freesurfer@nmr.mgh.harvard.edu
-
Faraz Yazdanibanafshedaragh -
Huang, Yujing