Hi Krish,

The last e-mail was incomplete here it is again. Thanks for your help.

-Moe

FREESURFER_HOME: /usr/local/freesurfer/stable4

Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.1.0-20090104

RedHat release: CentOS release 4.6 (Final)

Kernel info: Linux 2.6.9-67.ELsmp x86_64

NMR Center info (/space/freesurfer exists):

machine: grouch

SUBJECTS_DIR: /space/grouch/3/users/ext

PWD: /space/grouch/3/users/ext

--------------------------------------------------------------------- Please include the following additional information in your report:

1) subject name - fsaverage 2) the entire command-line executed tkmedit fsaverage orig.mgz -aux brain.mgz -bc-main .33 7 -overlay $SUBJECTS_DIR/Recall_vol_m_vs_f/Recall/CS+EevsCS-/tal.rfx.m_vs_f/double/sig.nii -fthresh 2 -fmax 4

3) the error message generated ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to analysis-bugs@nmr.mgh.harvard.edu : : Now exiting...

4) optionally include the subject's /script/recon-all.log

-----Original Message----- From: Krish Subramaniam [mailto:krish@nmr.mgh.harvard.edu] Sent: Tue 1/6/2009 6:27 PM To: Zeidan, Mohamed A. Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Trouble Creating label

Hi Moe

Could you copy the output of the command "bugr" which ships with Freesurfer. Just type bugr and send us. Basically, the exact workflow so that we can recreate the problem here. Is it specific to that particular volume?

Krish

On Jan 6, 2009, at 5:48 PM, Zeidan, Mohamed A. wrote:

Hello all,

I'm creating a label on a volume in tkmedit and as I do it, tkmedit will unexpectedly close and give me the following error message in the terminal window:

=================================== ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to analysis-bugs@nmr.mgh.harvard.edu : : Now exiting...

Any thoughts?

Thanks, Moe

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer