Hi Krish,
The last e-mail was incomplete here it is again. Thanks for your help.
-Moe
FREESURFER_HOME: /usr/local/freesurfer/stable4
Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.1.0-20090104
RedHat release: CentOS release 4.6 (Final)
Kernel info: Linux 2.6.9-67.ELsmp x86_64
NMR Center info (/space/freesurfer exists):
machine: grouch
SUBJECTS_DIR: /space/grouch/3/users/ext
PWD: /space/grouch/3/users/ext
--------------------------------------------------------------------- Please include the following additional information in your report:
1) subject name - fsaverage 2) the entire command-line executed tkmedit fsaverage orig.mgz -aux brain.mgz -bc-main .33 7 -overlay $SUBJECTS_DIR/Recall_vol_m_vs_f/Recall/CS+EevsCS-/tal.rfx.m_vs_f/double/sig.nii -fthresh 2 -fmax 4
3) the error message generated ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to analysis-bugs@nmr.mgh.harvard.edu : : Now exiting...
4) optionally include the subject's /script/recon-all.log
-----Original Message----- From: Krish Subramaniam [mailto:krish@nmr.mgh.harvard.edu] Sent: Tue 1/6/2009 6:27 PM To: Zeidan, Mohamed A. Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Trouble Creating label
Hi Moe
Could you copy the output of the command "bugr" which ships with Freesurfer. Just type bugr and send us. Basically, the exact workflow so that we can recreate the problem here. Is it specific to that particular volume?
Krish
On Jan 6, 2009, at 5:48 PM, Zeidan, Mohamed A. wrote:
Hello all,
I'm creating a label on a volume in tkmedit and as I do it, tkmedit will unexpectedly close and give me the following error message in the terminal window:
=================================== ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to analysis-bugs@nmr.mgh.harvard.edu : : Now exiting...
Any thoughts?
Thanks, Moe
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