Hi Fatma

try giving it the full path to the curv file. I think "curv" is the right format to specify, but I believe it needs the full path to the src and target

cheers Bruce On Tue, 30 Jul 2013, fatma zribi wrote:

Dear Bruce,

I try to execute this command to smooth and resample data but I have one message of error:

mri_surf2surf --srcsubject s000_open_brain_sanlm_+TIR_normlalized --srcsurfval curv --src_type curv --trgsubject avg_all_subjects_SD --trgsurfval curv --hemi lh --fwhm-src 15 --trg_type smoothed.source.15

the error is: ERROR: could not determine type of curv

thank you for your help,

With best regards,

Fatma

2013/7/29 Bruce Fischl fischl@nmr.mgh.harvard.edu can you cc the list so that others can answer or see the answer? You need to specify the source and target subjects with --srcsubject and --trgsubject

  cheers
  Bruce


  On Mon, 29 Jul 2013, fatma zribi wrote:

        mri_surf2surf --hemi lh --s
        s000_open_brain_sanlm_+TIR_normlalized --sval curv
        --src_type curv --fwhm 10 --trg_type curv --tval
        curv.10


        2013/7/29 Bruce Fischl <fischl@nmr.mgh.harvard.edu>
              what is your full command line? You can smooth
        and map with it (use -fwhm-src or fwhm-trg to smooth
        in either the
              source or target space)
              On Mon, 29 Jul 2013, fatma zribi wrote:

                    Dear Bruce,
                    I have tried mri-surf2surf, it makes the
        result (smoothed curv for example) with the same
        dimension of
                    the subject. But I would
                    like a smoothed file with the dimesion
        of fsaverage.

                    Thank you for your help.

                    With best regards,

                    Fatma


                    2013/7/29 Bruce Fischl
        <fischl@nmr.mgh.harvard.edu>
                          Hi Fatma

                          you can use mri_surf2surf within
        subject I believe, but Doug can confirm (although
        he's traveling
                    so it may be a
                          bit). You can also do it
        interactively in tksurfer.

                          cheers
                          Bruce


                          On Mon, 29 Jul 2013, fatma zribi
        wrote:

                                Dear Bruce,

                                Would you mind tell me if
        there is a function of freesurfer  that I can use to
        do the same
                    step of
                                qcache to smooth and
                                interpolate in the fsaverage
        one subject
                                with mri_surf2surf I can
        smooth only or align one subject with an average.
                                thank you for you help.
                                with best regards,
                                Fatma 




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        intended only for the person to whom it is
                    addressed. If you believe this e-mail
        was sent to you in error and the e-mail
                    contains patient information, please
        contact the Partners Compliance HelpLine at
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The argument to --src_type should be the input file (eg, lh.curv, lh.sulc, lh.thickness). The --trgsurfval should be the name of the output file and --trg_type should be curv

doug

On 7/30/13 3:25 AM, fatma zribi wrote:

Dear Bruce,

I try to execute this command to smooth and resample data but I have one message of error:

mri_surf2surf --srcsubject s000_open_brain_sanlm_+TIR_normlalized --srcsurfval curv --src_type curv --trgsubject avg_all_subjects_SD --trgsurfval curv --hemi lh --fwhm-src 15 --trg_type smoothed.source.15

the error is: ERROR: could not determine type of curv

thank you for your help,

With best regards,

Fatma

2013/7/29 Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu>

can you cc the list so that others can answer or see the answer?
You need to specify the source and target subjects with
--srcsubject and --trgsubject


cheers
Bruce


On Mon, 29 Jul 2013, fatma zribi wrote:

    mri_surf2surf --hemi lh --s
    s000_open_brain_sanlm_+TIR_normlalized --sval curv --src_type
    curv --fwhm 10 --trg_type curv --tval
    curv.10


    2013/7/29 Bruce Fischl <fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>>
          what is your full command line? You can smooth and map
    with it (use -fwhm-src or fwhm-trg to smooth in either the
          source or target space)
          On Mon, 29 Jul 2013, fatma zribi wrote:

                Dear Bruce,
                I have tried mri-surf2surf, it makes the result
    (smoothed curv for example) with the same dimension of
                the subject. But I would
                like a smoothed file with the dimesion of fsaverage.

                Thank you for your help.

                With best regards,

                Fatma


                2013/7/29 Bruce Fischl <fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>>
                      Hi Fatma

                      you can use mri_surf2surf within subject I
    believe, but Doug can confirm (although he's traveling
                so it may be a
                      bit). You can also do it interactively in
    tksurfer.

                      cheers
                      Bruce


                      On Mon, 29 Jul 2013, fatma zribi wrote:

                            Dear Bruce,

                            Would you mind tell me if there is a
    function of freesurfer  that I can use to do the same
                step of
                            qcache to smooth and
                            interpolate in the fsaverage one subject
                            with mri_surf2surf I can smooth only
    or align one subject with an average.
                            thank you for you help.
                            with best regards,
                            Fatma




                The information in this e-mail is intended only
    for the person to whom it is
                addressed. If you believe this e-mail was sent to
    you in error and the e-mail
                contains patient information, please contact the
    Partners Compliance HelpLine at
    http://www.partners.org/complianceline . If the e-mail was
    sent to you in error
                but does not contain patient information, please
    contact the sender and properly
                dispose of the e-mail.

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