Hi Santosh

not sure if anyone else answered this, but try running

recon-all -make all

and see if that does the trick.

cheers Bruce

On Fri, 15 Nov 2013, Santosh Kumar wrote:

Hi experts,

I came across an error in the third stage of reconstruction using freesurfer. I am rerunning freesurfer on windows 7 64 bit: freesurfer-Virtualbox-linux-x86-stable-pub-v5.1.0-full

I have following error:

#@# Sphere rh Fri Nov 15 14:28:04 EST 2013

/home/virtualuser/freesurfer/subjects/HF5015/scripts

mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere

setting seed for random number genererator to 1234

$Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $

$Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $

reading original vertex positions...

MRISreadVertexPosition(smoothwm): could not open file ../surf/rh.smoothwm

No such file or directory

MRISreadOriginalProperties: could not read surface file smoothwm

No such file or directory

Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP Fri Apr 17 01:57:59 UTC 2009 i686 GNU/Linux

recon-all -s HF5015 exited with ERRORS at Fri Nov 15 14:28:08 EST 2013.

Any help!

With regards,

Santosh