Dear Freesurfer experts,
I tried to run the local GI command recon-all -s -localGI and got the following error message:
??? Undefined function or method 'make_outer_surface' for input arguments of
type 'char'.
From earlier post I tried to fix the problem by changing the matlabpath like this:
setenv MATLABPATH /directory/bin
setenv PATH ${MATLABPATH}/bin:${PATH}
However, if I then check the path via "getmatlab" I still get the old path. Did I do something wrong? And is it right to set up my matlabpath to the matlab/bin folder?
The scripts like make_outer_surface.m are located in the freesurfer/matlab directory. Or does the path have to point to the scripts directly?
Thank you very much in advance
Kind regards, Christiane
------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------
Hi Christiane,
What do you mean when you say that you get the old path with getmatlab?
In any case, the error seems not related to a matlab path issue. Can you please attach the entire log?
Marie
On Nov 18, 2013, at 12:03 AM, "Jockwitz, Christiane" <c.jockwitz@fz-juelich.demailto:c.jockwitz@fz-juelich.de> wrote:
Dear Freesurfer experts,
I tried to run the local GI command recon-all –s –localGI and got the following error message:
??? Undefined function or method 'make_outer_surface' for input arguments of
type 'char'.
From earlier post I tried to fix the problem by changing the matlabpath like this:
setenv MATLABPATH /directory/bin
setenv PATH ${MATLABPATH}/bin:${PATH}
However, if I then check the path via „getmatlab“ I still get the old path. Did I do something wrong? And is it right to set up my matlabpath to the matlab/bin folder?
The scripts like make_outer_surface.m are located in the freesurfer/matlab directory. Or does the path have to point to the scripts directly?
Thank you very much in advance
Kind regards, Christiane
------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Jockwitz, Christiane -
Marie Schaer