Hi,

using version 4.0.5.

i used mri_extract_label on the aparc+aseg.mgz file to extract and convert labels into volume nifti files, which i can view and use outside FreeSurfer. works fine.

however, i have manually edited some surface labels, following the instructions found here: https://surfer.nmr.mgh.harvard.edu/fswiki/tksurfer_labeledit?action=fullsear...

these instructions result in a modified .annot file, which i have. my question: what is the best way to get a nifti volume for the modified (manually edited) label? ideally, this nifti volume should be exactly the same as done with mri_extract_label except for the modified part.

thanks, -joost