I don't know what version of FS you are using, but try adding --no-surfs to the tkregisterfv command line

On 11/16/2022 8:46 PM, Peter J. Kohler wrote:

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Hello Freesurfer,

I am trying to run recon-all on a dataset, and a subset of appear to have problems with the Talairach registration.

I believe that I should be able to check the Talairach registration, using this command:

tkregisterfv --s $sub_id --fstal

Since I have not run autorecon2 yet, I leave out the --surf orig flag as instructed here:

*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach_freeview

However, the command still throws an error because it cannot find "lh.white".

How do I check Talairach registration before running autorecon2?

Best,

Peter J. Kohler

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