I don't know what version of FS you are using, but try adding --no-surfs to the tkregisterfv command line
On 11/16/2022 8:46 PM, Peter J. Kohler wrote:
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Hello Freesurfer,
I am trying to run recon-all on a dataset, and a subset of appear to have problems with the Talairach registration.
I believe that I should be able to check the Talairach registration, using this command:
tkregisterfv --s $sub_id --fstal
Since I have not run autorecon2 yet, I leave out the --surf orig flag as instructed here:
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach_freeview
However, the command still throws an error because it cannot find "lh.white".
How do I check Talairach registration before running autorecon2?
Best,
Peter J. Kohler
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