Dear Jessica, There is no intensity image associated with the atlases, so this is not trivial. I guess you could register your subjects to the atlas, and propagate the hard segmentations? Cheers, /Eugenio

-- Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Jessica Bourgin jessica.bourgin@univ-smb.fr Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Wednesday, 7 August 2019 at 04:49 To: freesurfer freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Transform hippocampal/amygdala segmentation to another space

External Email - Use Caution Dear all,

I would like to use the Hippocampal Subfields and Nuclei Of Amygdala tool concomitantly with the Brainnetome Atlas for a resting-state analysis.

For this purpose, I need the hippocampal/amygdala nuclei to be in the same space as the Brainnetome.

Can you advise me on the method to use to transform the segmentation to another space ?

Thank you in advance for your help.

Best regards,

Jessica BOURGIN Laboratoire de Psychologie et Neurocognition CNRS UMR 5105 Université Savoie Mont Blanc (USMB) BP 1104 73011 Chambery Cedex France