Hi Prapti,

yesterday I had a similar question and went to search the wiki page to educate myself more, after Bruce responce. The following webpage defines the steps taken during the options you asks:

http://surfer.nmr.mgh.harvard.edu/fswiki/OtherUsefulFlags

There you can see that your -autorecon2-pial is a subset of -autorecon2-cp, and thus is redundant.

Best,

Martin

On Friday 29 August 2008 07:06:52 Prapti Gautam wrote:

Hi,

Is it possible to run recon-all so that both control point edits and brain volumes can be processed with a single command?

Currently I use

recon-all -autorecon2-cp -autorecon3 -subjid for corrections to control points

and recon-all -autorecon2-pial -autorecon3 -subjid for corrections to brain volume

but is there another way so that when a brain needs corrections with both control points and brain volume, both can be edited with a single command at the same time so that I save on processing times??

Thanks,

Prapti

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