Hi Prapti,
yesterday I had a similar question and went to search the wiki page to educate myself more, after Bruce responce. The following webpage defines the steps taken during the options you asks:
http://surfer.nmr.mgh.harvard.edu/fswiki/OtherUsefulFlags
There you can see that your -autorecon2-pial is a subset of -autorecon2-cp, and thus is redundant.
Best,
Martin
On Friday 29 August 2008 07:06:52 Prapti Gautam wrote:
Hi,
Is it possible to run recon-all so that both control point edits and brain volumes can be processed with a single command?
Currently I use
recon-all -autorecon2-cp -autorecon3 -subjid for corrections to control points
and recon-all -autorecon2-pial -autorecon3 -subjid for corrections to brain volume
but is there another way so that when a brain needs corrections with both control points and brain volume, both can be edited with a single command at the same time so that I save on processing times??
Thanks,
Prapti
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer