Ok-here is the file.
Michele
Bruce Fischl fischl@nmr.mgh.harvard.edu 10/4/2005 1:49:48 PM >>>
Hi Michele,
you need to send us more info than this. Preferably the whole recon-all.log file.
Bruce On Tue, 4 Oct 2005, Michele Grubb wrote:
Dear FS Help:
When running recon-all -subjid 18014B -autorecon3 -mgz
we got the following error message:
autorecon3 exited with errors- ERROR: mris_anatomical_status exited with nonzero status
What does this error mean? What can we do to reconcile this?
Thank you.
Michele
---------------------------------------------------------------------------------------------------
Michele C. Grubb, PhD Research Development Neurosciences Advanced Imaging Research Center 47 New Scotland Ave., MC65 Albany, NY 12208
office: (518) 262-0810 fax: (518) 262-0802
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Michele,
From looking at the recon-all.log, it appears that you have an older
version of freesurfer than contained a bug whereby mris_anatomical_stat was missing the -mgz flag.
You could either:
1) manually run mris_anatomical_stats as shown:
cd /home/amc/AMCSubjects/18014B mris_anatomical_stats -mgz -f scripts/rh.aparc.stats -b -a \ label/rh.aparc.annot 18014B rh
or
2) install a new 'dev' release of freesurfer and rerun your subject:
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
Nick
On Wed, 2005-10-05 at 11:33 -0400, Michele Grubb wrote:
Ok-here is the file.
Michele
Bruce Fischl fischl@nmr.mgh.harvard.edu 10/4/2005 1:49:48 PM >>>
Hi Michele,
you need to send us more info than this. Preferably the whole recon-all.log file.
Bruce On Tue, 4 Oct 2005, Michele Grubb wrote:
Dear FS Help:
When running recon-all -subjid 18014B -autorecon3 -mgz
we got the following error message:
autorecon3 exited with errors- ERROR: mris_anatomical_status exited with nonzero status
What does this error mean? What can we do to reconcile this?
Thank you.
Michele
Michele C. Grubb, PhD Research Development Neurosciences Advanced Imaging Research Center 47 New Scotland Ave., MC65 Albany, NY 12208
office: (518) 262-0810 fax: (518) 262-0802
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Michele Grubb -
Nick Schmansky