Thank you Nick!
Michele
Nick Schmansky nicks@nmr.mgh.harvard.edu 10/5/2005 12:12:44 PM
Michele,
From looking at the recon-all.log, it appears that you have an older
version of freesurfer than contained a bug whereby mris_anatomical_stat was missing the -mgz flag.
You could either:
1) manually run mris_anatomical_stats as shown:
cd /home/amc/AMCSubjects/18014B mris_anatomical_stats -mgz -f scripts/rh.aparc.stats -b -a \ label/rh.aparc.annot 18014B rh
or
2) install a new 'dev' release of freesurfer and rerun your subject:
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
Nick
On Wed, 2005-10-05 at 11:33 -0400, Michele Grubb wrote:
Ok-here is the file.
Michele
Bruce Fischl fischl@nmr.mgh.harvard.edu 10/4/2005 1:49:48 PM
Hi Michele,
you need to send us more info than this. Preferably the whole recon-all.log file.
Bruce On Tue, 4 Oct 2005, Michele Grubb wrote:
Dear FS Help:
When running recon-all -subjid 18014B -autorecon3 -mgz
we got the following error message:
autorecon3 exited with errors- ERROR: mris_anatomical_status exited with nonzero status
What does this error mean? What can we do to reconcile this?
Thank you.
Michele
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Michele C. Grubb, PhD Research Development Neurosciences Advanced Imaging Research Center 47 New Scotland Ave., MC65 Albany, NY 12208
office: (518) 262-0810 fax: (518) 262-0802
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Michele Grubb