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Hi FS-team,
I ran a longitudinal recon-all stream(FS version 7.1.1) and trying to convert the aseg.mgz back to native space. However, in the transform file the <tpid>_to_<tpid>.long.<baseid>.lta is missing. This is the case for every subject I ran, while the recon-all.log showed freesurfer finished without errors. I've attached the .log file. The base dir does have the needed transform files. How can I resolve this and transform ROI to native space?
Thank you in advance,
Kind regards,
David
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Are you looking in the base/mri/transforms folder? If it is not there, can you send the recon-all.log file for the base run
On 1/14/2021 11:12 AM, Nederpelt, D. van (David) wrote:
External Email - Use Caution
Hi FS-team,
I ran a longitudinal recon-all stream(FS version 7.1.1) and trying to convert the aseg.mgz back to native space. However, in the transform file the <tpid>_to_<tpid>.long.<baseid>.lta is missing.
This is the case for every subject I ran, while the recon-all.log showed freesurfer finished without errors. I’ve attached the .log file. The base dir does have the needed transform files.
How can I resolve this and transform ROI to native space?
Thank you in advance,
Kind regards,
David
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Douglas N. Greve -
Nederpelt, D. van (David)