Are you looking in the base/mri/transforms folder? If it is not there, can you send the recon-all.log file for the base run
On 1/14/2021 11:12 AM, Nederpelt, D. van (David) wrote:
External Email - Use Caution
Hi FS-team,
I ran a longitudinal recon-all stream(FS version 7.1.1) and trying to convert the aseg.mgz back to native space. However, in the transform file the <tpid>_to_<tpid>.long.<baseid>.lta is missing.
This is the case for every subject I ran, while the recon-all.log showed freesurfer finished without errors. I’ve attached the .log file. The base dir does have the needed transform files.
How can I resolve this and transform ROI to native space?
Thank you in advance,
Kind regards,
David
VUmc disclaimer : www.vumc.nl/disclaimer AMC disclaimer : www.amc.nl/disclaimer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer