Hi,
I am using FreeSurfer 4.5, on a 64-bit Dell Precision workstation. The OS is Centos 5.4.
I cannot input anything in tkmedit using my keyboard. I can only input curvature file names in tksurfer, but not overlay file names and threshold values. I searched the mailing archives, same thing happened to Hiroyuki (See below). I am wondering if this is a problem for 64-bit machine.
Any suggestions? Thank you.
XJ Kang
Dear all,
I am running freesurfer 4.5 on Ubuntu9.10(64bit). Is anybody experiencing " lost keyboard " problem? I cannot put any number in tkmedit and tksurfer using keyboard.
Thank you.
Hiroyuki
sorry i'm not sure what to suggest. we have dell precision 64bit machines here at our center running centos 5.4 which do not have a problem with keyboard entry in either tkmedit or tksurfer (i just double-checked).
is there something in your environment (added by your .cshrc or .bashrc) which is overriding a tcl, tk, tix or blt lib?
n.
On Wed, 2010-01-13 at 13:22 -0800, XJ Kang wrote:
Hi,
I am using FreeSurfer 4.5, on a 64-bit Dell Precision workstation. The OS is Centos 5.4.
I cannot input anything in tkmedit using my keyboard. I can only input curvature file names in tksurfer, but not overlay file names and threshold values. I searched the mailing archives, same thing happened to Hiroyuki (See below). I am wondering if this is a problem for 64-bit machine.
Any suggestions? Thank you.
XJ Kang
Dear all,
I am running freesurfer 4.5 on Ubuntu9.10(64bit). Is anybody experiencing " lost keyboard " problem? I cannot put any number in tkmedit and tksurfer using keyboard.
Thank you.
Hiroyuki
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi all
I want to specify a design matrix manually.
In the usual pipeline for analysis in freesurfer, one specifies the groups, regressors in the fsgd and then when mri_glmfit is run, it creates the design matrix. For eg if I have two classes with 3 subjects each, in my fsgd, mri_glmfit would create the following design matrix 1 0 1 0 1 0 0 1 0 1 0 1
If I want to specify the above design matrix manually, how and where do I specify the groups, regressors ?
Thanks in advance Raka
If you specify it manually, you don't specify groups, etc, or pass an fsgd file. You just create your design matrix pass it to mri_glmfit directly with the --X flag.
doug
raka maitra wrote:
Hi all
I want to specify a design matrix manually.
In the usual pipeline for analysis in freesurfer, one specifies the groups, regressors in the fsgd and then when mri_glmfit is run, it creates the design matrix. For eg if I have two classes with 3 subjects each, in my fsgd, mri_glmfit would create the following design matrix 1 0 1 0 1 0 0 1 0 1 0 1
If I want to specify the above design matrix manually, how and where do I specify the groups, regressors ?
Thanks in advance Raka
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas N Greve -
Nick Schmansky -
raka maitra -
XJ Kang