If you specify it manually, you don't specify groups, etc, or pass an fsgd file. You just create your design matrix pass it to mri_glmfit directly with the --X flag.
doug
raka maitra wrote:
Hi all
I want to specify a design matrix manually.
In the usual pipeline for analysis in freesurfer, one specifies the groups, regressors in the fsgd and then when mri_glmfit is run, it creates the design matrix. For eg if I have two classes with 3 subjects each, in my fsgd, mri_glmfit would create the following design matrix 1 0 1 0 1 0 0 1 0 1 0 1
If I want to specify the above design matrix manually, how and where do I specify the groups, regressors ?
Thanks in advance Raka
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