Hej Olof, The CA segmentations (along with all the others) are generated when calling segmentHA_T1.sh the standard way: segmentHA_T1.sh [SUBJECT_NAME] [SUBJECTS_DIR] Cheers, /Eugenio

Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Erik Lindberg erikoloflindberg@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Thursday, December 3, 2020 at 10:04 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] segmentHA_T1.sh

External Email - Use Caution Hi, I am trying to run the segmentHA_T1.sh with the suffix CA but I seem not be able to write the call correctly

How should I call this?

best Olof