Nope. Try using fslregister with --dof 12 and use $FSLDIR/data/standard/MNI152_T1_2mm_brain.nii.gz as the --mov.

doug

Yigal Agam wrote:

Thanks, Doug. Also, how can this be done from an individual brain to mni152? Do I need to use fsaverage as an intermediate?

Yigal

Douglas N Greve wrote:

...

Use $FREESURFER_HOME/average/mni152.register.dat and mri_vol2vol with --inv

Yigal Agam wrote:

...

Hi,

What's the best way to convert an fsaverage volume into an MNI152 volume that can be viewed on top of a standard brain (MNI152_T1_2mm_brain.nii.gz) in fslview?

Thanks, Yigal _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

That is the command that I would use. Make sure your activation map actually lines up with the MNI152 brain found in FSL.

dopug

Yigal Agam wrote:

Hi Doug,

Returning to this old thread: I'm doing what you said and getting weird results (activation not where I think it should be):

mri_vol2vol --mov <MNI152 template> --targ <fsaverage source> --inv --reg $FREESURFER_HOME/average/mni152.register.dat --o <output MNI volume> --no-save-reg

Can you give an example of the command you would use?

Thanks, Yigal

Douglas N Greve wrote:

...

Use $FREESURFER_HOME/average/mni152.register.dat and mri_vol2vol with --inv

Yigal Agam wrote:

...

Hi,

What's the best way to convert an fsaverage volume into an MNI152 volume that can be viewed on top of a standard brain (MNI152_T1_2mm_brain.nii.gz) in fslview?

Thanks, Yigal _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer