Re: [Freesurfer] fsaverage to mni152

Nope. Try using fslregister with --dof 12 and use $FSLDIR/data/standard/MNI152_T1_2mm_brain.nii.gz as the --mov.

doug

Yigal Agam wrote:

Thanks, Doug. Also, how can this be done from an individual brain to mni152? Do I need to use fsaverage as an intermediate?

Yigal

Douglas N Greve wrote:

...

Use $FREESURFER_HOME/average/mni152.register.dat and mri_vol2vol with --inv

Yigal Agam wrote:

...

Hi,

What's the best way to convert an fsaverage volume into an MNI152 volume that can be viewed on top of a standard brain (MNI152_T1_2mm_brain.nii.gz) in fslview?

Thanks, Yigal _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer