External Email - Use Caution
Dear experts, I am following PetSurfer steps (https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer). Something was wrong using mri_coreg function because when I checked the registration with tkregisterfv this error was shown in the terminal:
*Warning: Transformation can only apply to volumes for now. If your data includes ROI/Surface/Way Points, please do not use this feature yet.*
*MatrixAsciiReadFrom: could not scanf parms*
*Source temporarily unavailable*
*LTAchangeType: src geometry must be valid*
Can you help me? *I use these commands:*
dcm2niix s_001_PET_dicom (to convert dicom PET files to nii)gtmseg --s s_001mri_coreg --s s_001 --mov s_001_PET.nii --reg s_001.reg.ltatkregisterfv --mov s_001_PET.nii --reg s_001.reg.lta –surfs And it happens with all the subjects. Thank you in advance.Best regards,Marina.
what command does it happen with? Please send the full terminal output from the command
On 2/11/20 1:01 PM, Marina Fernández wrote:
External Email - Use Caution
Dear experts, I am following PetSurfer steps (https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer). Something was wrong using mri_coreg function because when I checked the registration with tkregisterfv this error was shown in the terminal:
/Warning: Transformation can only apply to volumes for now. If your data includes ROI/Surface/Way Points, please do not use this feature yet./
/MatrixAsciiReadFrom: could not scanf parms/
/Source temporarily unavailable/
/LTAchangeType: src geometry must be valid/
/ /
Can you help me? *I use these commands:* dcm2niix s_001_PET_dicom (to convert dicom PET files to nii) gtmseg --s s_001 mri_coreg --s s_001 --mov s_001_PET.nii --reg s_001.reg.lta tkregisterfv --mov s_001_PET.nii --reg s_001.reg.lta –surfs
And it happens with all the subjects. Thank you in advance. Best regards, Marina.
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Douglas N. Greve -
Marina Fernández