That is correct, Tegan! And welcome to FreeSurfer ;-)

Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Tegan Hargreaves thargrea@stjosham.on.ca Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, February 11, 2020 at 14:55 To: "'freesurfer@nmr.mgh.harvard.edu'" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Question re: hippocampal/amygdala subfields

External Email - Use Caution Hi all,

I am fairly new to FreeSurfer and am implanting the hippocampal/amygdala subfields script in our participants. As there are two versions of the hippocampal script (i.e., version 10 that is only hippocampus and version 21 which is both), I wanted to confirm that I should be using FS v6.0 (stable) for recon-all, and then running only the hippocampal/amygdala (v21) script through the dev version of FS. I don’t believe that I should be running the exclusively hippocampal script anymore, as the guide states it is now obsolete, but I just wanted to confirm.

Thank you so much!

Best,

Tegan

Tegan Hargreaves, MSc Research Assistant Peter Boris Centre for Addictions Research | St. Joseph’s Healthcare Hamilton 100 West 5th Street, Hamilton, ON L8P 3P2 P: 905-522-1155 ext. 36368 | E: thargrea@stjoes.camailto:thargrea@stjoes.ca

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