yes

tapsya@nmr.mgh.harvard.edu wrote:

Hi, is this true for FSFAST vs. 5.1 as well? -Tapsya

...

You will need the AFNI 3dvolreg command. This is the only AFNI command you'll need, but you may need to download and install AFNI to get it.

doug

Eiran Vadim Harel wrote:

...

Hi, I am using stable5.0-env. I have run the pre[processing command:

preproc-sess -s 1411_MC -surface fsaverage lhrh -mni305 -fwhm 5 -per-run

I got this ERROR message:

/autofs/space/shimshon_002/users/eiran/contproc/1411_MC RunList: 005 006 007 ------- ************************** ----------- ------- Motion Correcting Run 005 ----------- ------- ************************** ----------- sess = 1411_MC Fri Aug 5 11:51:17 EDT 2011 mc-afni2 --i 005/f.nii --t 005/template.nii --o 005/fmcpr.nii --mcdat 005/fmcpr.mcdat ERROR: cannot find AFNI command 3dvolreg

My PROJECT DIR: /space/shimshon/2/users/eiran/contproc SUBJECTS_DIR: /space/shimshon/2/users/eiran/subjects

Is there a way to solve it? Thanks, Eiran _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer