Re: [Freesurfer] loading label in tksurfer - Freesurfer

29 Jul 2009

      Hi Sharmili,
this is not an error message. It is sampling the volume label coords onto 
the surface. What happens next? Does tksurfer display the label?
cheers,
Bruce
On Wed, 29 Jul 2009, Sharmili 57 wrote:
...
Hi !
Thats all it says. The window with the inflated brain shuts down, as soon as i load the labe. But i don't get an error message.
ssrithar@beo-01:/data/Psychiatrie/01_Projects_Folder/DA_Sritharan/Freesurfer $ t
ksurfer FASC rh inflated
surfer: current subjects dir: /data/Psychiatrie/01_Projects_Folder/DA_Sritharan/
Freesurfer
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer:     /data/Psychiatrie/01_Projects_Folder/DA_Sritharan/Freesurfer
surfer: Reading header info from /data/Psychiatrie/01_Projects_Folder/DA_Srithar
an/Freesurfer/FASC/mri/T1.mgz
surfer: vertices=147680, faces=295356
Loading /apps/prod/i686/freesurfer-4.4.0/surface_labels.txt
surfer: ### redraw failed: no gl window open
surfer: single buffered window
surfer: tkoInitWindow(FASC)
surfer: using interface /apps/prod/i686/freesurfer-4.4.0/lib/tcl/tksurfer.tcl
Reading /apps/prod/i686/freesurfer-4.4.0/lib/tcl/tkm_common.tcl
Reading /apps/prod/i686/freesurfer-4.4.0/lib/tcl/tkm_wrappers.tcl
Reading /apps/prod/i686/freesurfer-4.4.0/lib/tcl/fsgdfPlot.tcl
Reading /apps/prod/i686/freesurfer-4.4.0/lib/tcl/tkUtils.tcl
Successfully parsed tksurfer.tcl
reading white matter vertex locations...
% /data/Psychiatrie/01_Projects_Folder/DA_Sritharan/Freesurfer/FASC/label/tfusif
orm.rh.label /data/Psychiatrie/01_Projects_Folder/DA_Sritharan/Freesurfer/FASC/l
abel/tfusiform.rh.label
********************      2107 nonzero vertices found ********************
2107 unassigned vertices in label - building spatial LUT...
assigning vertex numbers to label...
Thanks for your help
Sharmili
...
Date: Wed, 29 Jul 2009 07:59:05 -0400
From: fischl@nmr.mgh.harvard.edu
To: sharmili75@hotmail.com
Subject: Re: loading label in tksurfer
Hi Sharmali,
can you just send us the text output in your email message instead of an
image? That would be much more helpful.
thanks
Bruce
On Wed, 29 Jul 2009, Sharmili 57
wrote:
...
From: sharmili75@hotmail.com
To: freesurfer@nmr.mgh.harvard.edu
Date: Mon, 27 Jul 2009 22:54:21 +0000
Subject: [Freesurfer] FW: loading label in tksurfer
Hi !
I've edited a label in tkmedit and now  I want to open it with tksurfer, but I get the following error message.
Could anyone help me?
Best
Sharmili
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