[like] Iglesias Gonzalez, Juan E. reacted to your message: ________________________________ From: Villagran Asiares, Alberto Gaston Alberto.Villagran@med.uni-muenchen.de Sent: Thursday, October 16, 2025 8:15:07 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Re: SuperSynth installation

External Email - Use Caution

Dear Eugenio,

Thanks for the info. I see I will have to update my ubuntu hah

Best,

Alberto

Alberto Villagran, MSc.

Medical imaging scientist, cBrain

LMU University Hospital

cBRAIN | Child Brain Research and Imaging in Neuroscience

Department of Child and Adolescent Psychiatry, Psychosomatics, and Psychotherapy

Campus Innenstadt | Nussbaumstr. 5 | 80336 Munich, Germany

alberto.villagran@med.uni-muenchen.demailto:ikoerte@med.lmu.de | www.lmu-klinikum.dehttp://secure-web.cisco.com/1MyCOIBw7riMdMPvSiARXbI7p5kd3iQeYvOQjm6X5LbePVeMPPnJmfLZ_yU38L0EFEkQw4WNa8x8UQMPEoKAafSb7bEZjS0yI6LgkDS20So348FETHk0KBCX0HyXjGKiT3yZn9RPRIBXgMcT4A-W1BC3ATlauGoyHcH_hUeaPI7vX9ZWLMif3qofWmCZKdteoqlVnyvvCCOjc5JeZpUDlgEMTiORCHlmzD-6t4tKVO-L-ehzoRjVGznh6ZZmY5aajVoNTgzRFut2LoDf8dH8pRNUoBZkkHfJRijzxh2cfT8InS6FJKqOvTMkKHfdrS4BGxf1tPi3WvNT8CN7WZ2erow/http%3A%2F%2Fwww.lmu-klinikum.de%2F | www.pediatric-neuroimaging.dehttp://secure-web.cisco.com/1aK26hKT4rdr1BqwBSfNtowzfTHBIK0ObozDnQPkxCeEhM9d_XmMI2vaKj1XeD5YrDNK8IeaYE1enPgyK2fabaf1FhLVJW7TFEgsNhdVijGxBDT7qX_YSnV8K-Oy4efcLzqiRk8BwXOhnkJU1x7P0MJa8ainYz27LOnaJZ24ISGROpTmfLJvKnrgm5tZln99hi8vcJ9TTnBIA-lM8if0OvUgC4n_Cy7Sl2gCXNEp9FMPd1YcmJT8okq1dMRPGHGKcDgT0TroIjCVHIALrrzCwPGZUpn0bZDed1fr29TWOvPvHdJ8_7xeQdltc8RXhSL8JD8gT2VSkTaeoCg3qogi2qg/http%3A%2F%2Fwww.pediatric-neuroimaging.de%2F

[1689928693747]

The LMU University Hospital Munich is an institution under Public Law

http://secure-web.cisco.com/1aK26hKT4rdr1BqwBSfNtowzfTHBIK0ObozDnQPkxCeEhM9d_XmMI2vaKj1XeD5YrDNK8IeaYE1enPgyK2fabaf1FhLVJW7TFEgsNhdVijGxBDT7qX_YSnV8K-Oy4efcLzqiRk8BwXOhnkJU1x7P0MJa8ainYz27LOnaJZ24ISGROpTmfLJvKnrgm5tZln99hi8vcJ9TTnBIA-lM8if0OvUgC4n_Cy7Sl2gCXNEp9FMPd1YcmJT8okq1dMRPGHGKcDgT0TroIjCVHIALrrzCwPGZUpn0bZDed1fr29TWOvPvHdJ8_7xeQdltc8RXhSL8JD8gT2VSkTaeoCg3qogi2qg/http%3A%2F%2Fwww.pediatric-neuroimaging.de%2F

________________________________ From: Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Friday, 10 October 2025 16:27:21 To: Freesurfer support list Subject: [Freesurfer] Re: SuperSynth installation

Dear Alberto, Download and install the development version of FreeSurfer: https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/https://secure-web.cisco.com/1XNKWMoZEq-WswQI2sfoMTLPnpIRCh0Dnal7ofyynfx2iANUtsw6Sa68xdvGCqxprxDOErCNF7V782vtJsKSs4_YC0hcEtjTt9rI9QgFJbmdJDJFVXQSocKo_jc15NTRDQYnVc-1IAxQoM1b5olMLdnIBTtZ4cBnoWNc-3u6c1Gtoms4lCSu278ouJAJm3b67fKamLyQDMV_r9dRGOITKIZPvDLuO2YcqI6m6XGDB_3lHbEWW1ESyU5LlDi3CmdZ2MW2eiwqC30WxU4fYai8eW1uiwR1y34tIocC1xc2BXPwveu3O9BgflqN45BhAkGTSx96xShhDDZz1ZxqUu-gPuw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2Fdev%2F SuperSynth will be in there. Cheers, /Eugenio

--

Juan Eugenio Iglesias

http://www.jeiglesias.com

From: Villagran Asiares, Alberto Gaston Alberto.Villagran@med.uni-muenchen.de Date: Friday, October 10, 2025 at 3:57 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SuperSynth installation

External Email - Use Caution

Dear FS team,

I would like to download and install the new tool SuperSynth, but in the website https://surfer.nmr.mgh.harvard.edu/fswiki/SuperSynthhttps://secure-web.cisco.com/18MP8JHWryfxiACBRnfoU4br-5flNCh2swH8o1jClq0ot-VRaFMF1Yt9qJtlqXnATtmGrnSYbmd7armoVBtzYaQSBXfARg8ibND4uX0U6E_zbtrmS6GojF1JLfhQx21U3Y5P2owz_cmimbiX3RlW5nQGZlvQNt6L1QJiVcPbm9oCzhOHwhp9mQEQwo63JjjfJDFUFfPBdtC7Bi1-oqSl1EjLWEfuvuTmMw8DaV2mW1Qz_BcCLArx7dhqN6hl3iBH3E-C5-4cXy_9YmEhhhcsEk24wDVhNgN3VKF8xuHwW1b0Cq7YeT_C-A-9LlrQzoXC3Eieo3TbmW1Njc8GveWYzHg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FSuperSynth it is not clear to me how to get it.

Thanks in advance,

Best,

Alberto

Alberto Villagran, MSc.

Medical imaging scientist, cBrain

LMU University Hospital

cBRAIN | Child Brain Research and Imaging in Neuroscience

Department of Child and Adolescent Psychiatry, Psychosomatics, and Psychotherapy

Campus Innenstadt | Nussbaumstr. 5 | 80336 Munich, Germany

alberto.villagran@med.uni-muenchen.de | www.lmu-klinikum.dehttp://secure-web.cisco.com/1rcKy1exbD7l9jcnkpm5mFD6w6-_OSaM6e10o153_MNCN_HiTMak-y57OE2WfLZEkzNGKBqbOiGUXfaCigJiAAkcuvXcb7eoC01RUOtUiFSxURqOcsAb6E3WYzJT8x4WLEfnrM5uVSTAZEpaKTYIXj71IhQqEJNozvVVq0jYuKf9cTdR0TBeR7oQJrd2B3SRRrrnWHH_P_Yxn4cSF64MVGhxpBtP2mJ6n6iVBcEVUosnQXOIvihjkMFx6JpegAUEaFhb6F8_Wcndg74-eVXttwzyofUKItScKiWKDlQEqx8kYc44xxcu3kMB9kbQOjCvF8Fuaz7iFWMHVNcirr8GX5w/http%3A%2F%2Fwww.lmu-klinikum.de%2F | www.pediatric-neuroimaging.dehttp://secure-web.cisco.com/1Cm49ihGGXeuPrHL8EwNOUG8a1I_sg8_l56Poy_-xnm2Up_nsNmkCydbKrNwtYoqoW7eFgt7oZ9BQaVmc1lRpPbf56K_jn8ML2CN098wbVhrbxe-2NPlPS86uMCEHy4Kms2nMhiXz9VZZKx--FObKaQEAdkx8TKd1LAobogJIH-Otnqcz3XFUth-uxl8v38-3DqCTm5vWVSObeS2xBs3OyLc5aJcZJIliAkJhPiHZq7ojUi-US8sgUJyyuLD5sBlghzuHC9sa_EjdomMXEtbOhNC7jH1imH8hfY9xRto540xA9iuUXCJsxp2Y2m0K-AXsCdCB_J1acx39cKQuAHRTNw/http%3A%2F%2Fwww.pediatric-neuroimaging.de%2F

[1689928693747]

The LMU University Hospital Munich is an institution under Public Law

Dear Ajay, All outputs will be 1,1,1mm, independently of the input resolution ;-) Kind regards, /Eugeno

--

Juan Eugenio Iglesias

http://www.jeiglesias.com

From: Ajay Sharma ashar126@jh.edu Date: Sunday, October 19, 2025 at 5:47 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Re: SuperSynth installation

External Email - Use Caution Hi dear fellows,

What are the correct commands to follow to compare volume at 3 T and low field data.

High field is at 1,1,2 mm and lf at 2,2,5. We will convert lf inputs to 1,1,2 or 1,1,1.

What are correct command to run and perform analysis.

Many thanks

Get Outlook for Androidhttps://secure-web.cisco.com/1ITZUaQpK_wNT0bfiWzDfjVovtmX1A4Ul4Xn-6nvjXNFR6mYAppDThfKiAdQtcvpFMBd44daZ-fYHWThnamxuZNwliIsPlk2ia2BKcZcrvzk8vjPDTqcrCT2JVcq2Ia7ey-QdfSLBxJfREEPSfmnH7mX97gEKxH4UCugrNMmmTdYMsQruO-dd8OWokKtq9Cuf73jX_9VNfdpQ4v8dc1-ejGlyK43vzE-k00j0L8HNq8Yuz-hM7S7Ql0WE3PuNI1ST6VpGi_ZF-qlhT8ZpOzjJhpwJPJ--txch0GHhVfzaI-iKvy8N0miskev4eP-vRJNx/https%3A%2F%2Faka.ms%2FAAb9ysg ________________________________ From: Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Thursday, October 16, 2025 5:10:23 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Re: SuperSynth installation

External Email - Use Caution

[like] Iglesias Gonzalez, Juan E. reacted to your message: ________________________________ From: Villagran Asiares, Alberto Gaston Alberto.Villagran@med.uni-muenchen.de Sent: Thursday, October 16, 2025 8:15:07 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Re: SuperSynth installation

External Email - Use Caution

Dear Eugenio,

Thanks for the info. I see I will have to update my ubuntu hah

Best,

Alberto

Alberto Villagran, MSc.

Medical imaging scientist, cBrain

LMU University Hospital

cBRAIN | Child Brain Research and Imaging in Neuroscience

Department of Child and Adolescent Psychiatry, Psychosomatics, and Psychotherapy

Campus Innenstadt | Nussbaumstr. 5 | 80336 Munich, Germany

alberto.villagran@med.uni-muenchen.de | www.lmu-klinikum.dehttp://secure-web.cisco.com/1MyCOIBw7riMdMPvSiARXbI7p5kd3iQeYvOQjm6X5LbePVeMPPnJmfLZ_yU38L0EFEkQw4WNa8x8UQMPEoKAafSb7bEZjS0yI6LgkDS20So348FETHk0KBCX0HyXjGKiT3yZn9RPRIBXgMcT4A-W1BC3ATlauGoyHcH_hUeaPI7vX9ZWLMif3qofWmCZKdteoqlVnyvvCCOjc5JeZpUDlgEMTiORCHlmzD-6t4tKVO-L-ehzoRjVGznh6ZZmY5aajVoNTgzRFut2LoDf8dH8pRNUoBZkkHfJRijzxh2cfT8InS6FJKqOvTMkKHfdrS4BGxf1tPi3WvNT8CN7WZ2erow/http%3A%2F%2Fwww.lmu-klinikum.de%2F | www.pediatric-neuroimaging.dehttp://secure-web.cisco.com/1aK26hKT4rdr1BqwBSfNtowzfTHBIK0ObozDnQPkxCeEhM9d_XmMI2vaKj1XeD5YrDNK8IeaYE1enPgyK2fabaf1FhLVJW7TFEgsNhdVijGxBDT7qX_YSnV8K-Oy4efcLzqiRk8BwXOhnkJU1x7P0MJa8ainYz27LOnaJZ24ISGROpTmfLJvKnrgm5tZln99hi8vcJ9TTnBIA-lM8if0OvUgC4n_Cy7Sl2gCXNEp9FMPd1YcmJT8okq1dMRPGHGKcDgT0TroIjCVHIALrrzCwPGZUpn0bZDed1fr29TWOvPvHdJ8_7xeQdltc8RXhSL8JD8gT2VSkTaeoCg3qogi2qg/http%3A%2F%2Fwww.pediatric-neuroimaging.de%2F

[1689928693747]

The LMU University Hospital Munich is an institution under Public Law

________________________________ From: Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Friday, 10 October 2025 16:27:21 To: Freesurfer support list Subject: [Freesurfer] Re: SuperSynth installation

Dear Alberto, Download and install the development version of FreeSurfer: https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/https://secure-web.cisco.com/1XNKWMoZEq-WswQI2sfoMTLPnpIRCh0Dnal7ofyynfx2iANUtsw6Sa68xdvGCqxprxDOErCNF7V782vtJsKSs4_YC0hcEtjTt9rI9QgFJbmdJDJFVXQSocKo_jc15NTRDQYnVc-1IAxQoM1b5olMLdnIBTtZ4cBnoWNc-3u6c1Gtoms4lCSu278ouJAJm3b67fKamLyQDMV_r9dRGOITKIZPvDLuO2YcqI6m6XGDB_3lHbEWW1ESyU5LlDi3CmdZ2MW2eiwqC30WxU4fYai8eW1uiwR1y34tIocC1xc2BXPwveu3O9BgflqN45BhAkGTSx96xShhDDZz1ZxqUu-gPuw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2Fdev%2F SuperSynth will be in there. Cheers, /Eugenio

--

Juan Eugenio Iglesias

http://www.jeiglesias.com

From: Villagran Asiares, Alberto Gaston Alberto.Villagran@med.uni-muenchen.de Date: Friday, October 10, 2025 at 3:57 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SuperSynth installation

External Email - Use Caution

Dear FS team,

I would like to download and install the new tool SuperSynth, but in the website https://surfer.nmr.mgh.harvard.edu/fswiki/SuperSynthhttps://secure-web.cisco.com/18MP8JHWryfxiACBRnfoU4br-5flNCh2swH8o1jClq0ot-VRaFMF1Yt9qJtlqXnATtmGrnSYbmd7armoVBtzYaQSBXfARg8ibND4uX0U6E_zbtrmS6GojF1JLfhQx21U3Y5P2owz_cmimbiX3RlW5nQGZlvQNt6L1QJiVcPbm9oCzhOHwhp9mQEQwo63JjjfJDFUFfPBdtC7Bi1-oqSl1EjLWEfuvuTmMw8DaV2mW1Qz_BcCLArx7dhqN6hl3iBH3E-C5-4cXy_9YmEhhhcsEk24wDVhNgN3VKF8xuHwW1b0Cq7YeT_C-A-9LlrQzoXC3Eieo3TbmW1Njc8GveWYzHg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FSuperSynth it is not clear to me how to get it.

Thanks in advance,

Best,

Alberto

Alberto Villagran, MSc.

Medical imaging scientist, cBrain

LMU University Hospital

cBRAIN | Child Brain Research and Imaging in Neuroscience

Department of Child and Adolescent Psychiatry, Psychosomatics, and Psychotherapy

Campus Innenstadt | Nussbaumstr. 5 | 80336 Munich, Germany

alberto.villagran@med.uni-muenchen.de | www.lmu-klinikum.dehttp://secure-web.cisco.com/1rcKy1exbD7l9jcnkpm5mFD6w6-_OSaM6e10o153_MNCN_HiTMak-y57OE2WfLZEkzNGKBqbOiGUXfaCigJiAAkcuvXcb7eoC01RUOtUiFSxURqOcsAb6E3WYzJT8x4WLEfnrM5uVSTAZEpaKTYIXj71IhQqEJNozvVVq0jYuKf9cTdR0TBeR7oQJrd2B3SRRrrnWHH_P_Yxn4cSF64MVGhxpBtP2mJ6n6iVBcEVUosnQXOIvihjkMFx6JpegAUEaFhb6F8_Wcndg74-eVXttwzyofUKItScKiWKDlQEqx8kYc44xxcu3kMB9kbQOjCvF8Fuaz7iFWMHVNcirr8GX5w/http%3A%2F%2Fwww.lmu-klinikum.de%2F | www.pediatric-neuroimaging.dehttp://secure-web.cisco.com/1Cm49ihGGXeuPrHL8EwNOUG8a1I_sg8_l56Poy_-xnm2Up_nsNmkCydbKrNwtYoqoW7eFgt7oZ9BQaVmc1lRpPbf56K_jn8ML2CN098wbVhrbxe-2NPlPS86uMCEHy4Kms2nMhiXz9VZZKx--FObKaQEAdkx8TKd1LAobogJIH-Otnqcz3XFUth-uxl8v38-3DqCTm5vWVSObeS2xBs3OyLc5aJcZJIliAkJhPiHZq7ojUi-US8sgUJyyuLD5sBlghzuHC9sa_EjdomMXEtbOhNC7jH1imH8hfY9xRto540xA9iuUXCJsxp2Y2m0K-AXsCdCB_J1acx39cKQuAHRTNw/http%3A%2F%2Fwww.pediatric-neuroimaging.de%2F

[1689928693747]

The LMU University Hospital Munich is an institution under Public Law