Thanks Nick and Anil! I tried with the Bert data set in its original location, and got a different kind of error:

ERROR: talairach_afd::Load_xfm(): could not parse transforms/talairach.xfm Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string.

I am now trying to run recon-all through FMRIB (FSL)...

Tudor

On 18 February 2013 00:25, Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:

Thanks Anil! Tudor, sounds like you should give this a try.

I'm re-posting this to the freesurfer list to archive it.

Nick

...

Hi

I am having the same problem but I have an idea where it's occurring.

I have Windows XP Virtualbox Ubuntu Install where I have an windows share on the Linux using shared folder from windows

When I use the shared folder it gives this error When I use the Bert data set in its original location subjects dir it works fine When I transfer a new subject in virtualuser Freesurfer subjects folder it's works fine I ran it with -debug command to check and I thinks nu_ estimate makes

some

...

temp folders which gets messed up when you use shared folders. So to avoid this error transfer the subjects folder to virtualuser

subject

...

folder rather than using -sd command to specify a shared folder

Sincerely

Anil

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.