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you cannot run tksurferfv with a tcl script. tksurferfv is just a frontend for freeview that will take tksurfer-like options.

On 5/26/2023 9:54 AM, Robert Terziev wrote:

External Email - Use Caution

Hello,

I am trying to run an old script from the ENIGMA webpage, that was based on freesurfer 5.1 and uses *tksurfer*.

Here is a code excerpt:

tksurfer $sub lh pial -tcl tmp.tcl
echo "labl_import_annotation \"aparc.annot\"" > tmp.tcl
echo "scale_brain 1.35" >> tmp.tcl
echo "redraw" >> tmp.tcl
echo "save_tiff "$QCdir/$sub/"rh.lat.hr.tif" >> tmp.tcl

I have found that I could try to use *tksurferfv* instead, but then I get the error message “Option 'tcl' not recognized. Run 'freeview -h' for more information.” Running 'freeview -h', I don’t find a solution.

Is there a workaround for that problem?

Thank you very much in advance. Kind regards Robert

Freesurfer Version: freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b Plattform: macOS Ventura v13.3.1

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