That will do what you want. The only thing I would suggest is to remove the --thmax option (in which case it will default to infinity). The way you have it, it will ignore any vertices where the value exceeds 100. doug

On 09/21/2012 04:44 PM, Josef Ling wrote:

Hello,

I'm trying to test the effect of thresholds on some sample data. I'd like to look at how many clusters survive different thresholds. I also want to filter out really small clusters.

My data have already been projected onto the fsaverage template.

In the simplified case below, I expect a report of clusters>= 10mm^2 whose value is> 1.0.

Does the following command look reasonable?

						mri_surfcluster \
							--in xxx.stat.fsaverage.mgh \
							--subject fsaverage \
							--hemi lh \
							--surf inflated \
							--thmin 1.0 \
							--sign pos \
							--thmax 100.0 \
							--no-adjust \
							--minarea 10 \
							--sum pos.summary.txt

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