That will do what you want. The only thing I would suggest is to remove the --thmax option (in which case it will default to infinity). The way you have it, it will ignore any vertices where the value exceeds 100. doug
On 09/21/2012 04:44 PM, Josef Ling wrote:
Hello,
I'm trying to test the effect of thresholds on some sample data. I'd like to look at how many clusters survive different thresholds. I also want to filter out really small clusters.
My data have already been projected onto the fsaverage template.
In the simplified case below, I expect a report of clusters>= 10mm^2 whose value is> 1.0.
Does the following command look reasonable?
mri_surfcluster \ --in xxx.stat.fsaverage.mgh \ --subject fsaverage \ --hemi lh \ --surf inflated \ --thmin 1.0 \ --sign pos \ --thmax 100.0 \ --no-adjust \ --minarea 10 \ --sum pos.summary.txtthanks _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer