Yes but I don't want to create a registration template initialized with FS template (fsaverage). That's why I followed the part "creating a registration template from scratch" in this web page http://surfer.nmr.mgh.harvard.edu/fswiki/SurfaceRegAndTemplates

But for annotation I will have to use apart.annot created from ?h.sphere.reg registered on FS template ?

We just want to be sure that there is no influence of the template with our data because If I well saw it has been done with 40 subjects aged from 18-87 including 11 Alzheimer's ?

Sophie

Le 17/04/13 17:19, « Douglas N Greve » greve@nmr.mgh.harvard.edu a écrit :

I'd suggest running make_average_subject which will create tiffs for you as well as other useful template-specific maps (like an annotation). doug

On 04/17/2013 05:48 AM, Sophie Maingault wrote:

...

Hi Experts,

I'm creating a template from scratch. When I run mris_make_template is it enough to run mris_make_template ?h smoothwm <subjid> my.temp0.tif ? My question is about which sphere_name I have to put for argument ? I hope I was clear.

Best regards.

Sophie

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.