Hi Sophie
the surface has to be a spherical one. Internally it will use the geometry for some other surfaces like smoothwm, but the command line has to be a spherical surfaces. Usually the first time with an individual subject you can use sphere, but if you are using multiple ones it should be sphere.reg.
I'll cc the list so that others who are interested can see the response.
cheers Bruce
On Wed, 17 Apr 2013, Sophie Maingault wrote:
But it is not really from scratch ?
Because I run mris_make_template ?h smoothwm sujet0 mytemp0.tif (one reference subject) mris_make_template ?h sphere sujet0 mytemp0.tif (one reference subject)
mris_register -curv ?h.sphere mytemp0.tif ?h.sphere.myreg0 (for all the subjects that I want to use in order to create my template)
Then If i do : mris_make_template ?h sphere.myreg0 mytemp1.tif
mytemp1.tif will represent corresponding points across subjects ?
Sophie
Le 17/04/13 15:42, « Bruce Fischl » fischl@nmr.mgh.harvard.edu a écrit :
Hi Sophie,
if you want the template to represent corresponding points across your subjects you need to use sphere.reg
cheers Bruce On Wed, 17 Apr 2013, Sophie Maingault wrote:
Hi Experts,
I'm creating a template from scratch. When I run mris_make_template is it enough to run mris_make_template ?h smoothwm <subjid> my.temp0.tif ? My question is about which sphere_name I have to put for argument ? I hope I was clear.
Best regards.
Sophie
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Hi,
On Wed, April 17, 2013 10:27 am, Bruce Fischl wrote:
Hi Sophie
the surface has to be a spherical one. Internally it will use the geometry for some other surfaces like smoothwm, but the command line has to be a spherical surfaces. Usually the first time with an individual subject you can use sphere, but if you are using multiple ones it should be sphere.reg.
I'll cc the list so that others who are interested can see the response.
cheers Bruce
On Wed, 17 Apr 2013, Sophie Maingault wrote:
But it is not really from scratch ?
Because I run mris_make_template ?h smoothwm sujet0 mytemp0.tif (one reference subject) mris_make_template ?h sphere sujet0 mytemp0.tif (one reference subject)
mris_register -curv ?h.sphere mytemp0.tif ?h.sphere.myreg0 (for all the subjects that I want to use in order to create my template)
Then If i do : mris_make_template ?h sphere.myreg0 mytemp1.tif
Won't this be: mris_register -curv ?h.sphere mytemp0.tif ?h.sphere.reg ?
mytemp1.tif will represent corresponding points across subjects ?
Sophie
Le 17/04/13 15:42, « Bruce Fischl » fischl@nmr.mgh.harvard.edu a écrit :
Hi Sophie,
if you want the template to represent corresponding points across your subjects you need to use sphere.reg
cheers Bruce On Wed, 17 Apr 2013, Sophie Maingault wrote:
Hi Experts,
I'm creating a template from scratch. When I run mris_make_template is it enough to run mris_make_template ?h smoothwm <subjid> my.temp0.tif ? My question is about which sphere_name I have to put for argument ? I hope I was clear.
Best regards.
Sophie
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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