Nothing is transformed during the reconstruction. The transform is computed but not applied. If you want to transform the results into any other space, then you need a registration matrix to that space and then you can run mri_vol2vol or mri_label2vol.

doug

Lisa F. Akiyama wrote:

Hi FreeSurfers,

Is it possible to tranform a MRI to an atlas that is not "talairach" (MNI305 atlas) using the talairach_avi command or using another command in FreeSurfer?

Thank you.

Best, Lisa ______________________________ Lisa F. Akiyama Research Study Assistant Institute for Learning & Brain Sciences (I-LABS) University of Washington

P Please consider the environment before printing this e-mail.

---

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer