Nothing is transformed during the reconstruction. The transform is computed but not applied. If you want to transform the results into any other space, then you need a registration matrix to that space and then you can run mri_vol2vol or mri_label2vol.
doug
Lisa F. Akiyama wrote:
Hi FreeSurfers,
Is it possible to tranform a MRI to an atlas that is not "talairach" (MNI305 atlas) using the talairach_avi command or using another command in FreeSurfer?
Thank you.
Best, Lisa ______________________________ Lisa F. Akiyama Research Study Assistant Institute for Learning & Brain Sciences (I-LABS) University of Washington
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