Hi Marcus,

I don't think that anyone is supporting the old freediffusion stream anymore. You can try dt_recon (note it is not "dtrecon"). Run with --help to get more info.

doug

Marcus Belke wrote:

Hi

we are currently working on the DTI data and we are trying to get the mc-step running using diff-flirt. it does not work, although the unpacking and the dtrecon seem to work fine. I have attached the log-file and copied the error message at the bottom. Can anyone help? Thanks a lot! Best regards, Marcus

-------- ERROR MESSAGE-------- ... ... Registering volume 1 flirt -in ./tmp/diff-flirt-8311/f-001.img -ref ./tmp/diff-flirt-8311/f-000.img -out ./tmp/diff-flirt-8311/f-001.img -omat ./tmp/diff2diff-001.mat -verbose 3 -dof 12 -searchrx -15 15 -searchry -15 15 -searchrz -15 15 -cost mutualinfo -searchcost mutualinfo -bins 256

WARNING!!!! Multiple image files detected: ./tmp/diff-flirt-8311/f-000.nii.gz ./tmp/diff-flirt-8311/f-000.img ./tmp/diff-flirt-8311/f-000.hdr

STOPPING PROGRAM ERROR: flirt failed with status 1

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