Hi all,
I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message:
Setting TER to .10000000000000000000 /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info file, /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
The seq.info file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached.
Thank you in advance.
Pablo
which version are you using? The seq.info file has not been used in a long time. doug
Pablo Polosecki wrote:
Hi all,
I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message:
Setting TER to .10000000000000000000 /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info http://seq.info file, /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
The seq.info http://seq.info file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached.
Thank you in advance.
Pablo
-- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu mailto:ppolosecki@mail.rockefeller.edu
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi,
I forgot to put the version, my bad. The version is 4.5. Thanks, Pablo
On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu
wrote:
which version are you using? The seq.info file has not been used in a long time. doug
Pablo Polosecki wrote:
Hi all,
I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message:
Setting TER to .10000000000000000000 /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info http://seq.info file, /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
The seq.info http://seq.info file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me.
Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached.
Thank you in advance.
Pablo
-- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu mailto: ppolosecki@mail.rockefeller.edu
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
What is your command-line?
Pablo Polosecki wrote:
Hi,
I forgot to put the version, my bad. The version is 4.5. Thanks, Pablo
On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
which version are you using? The seq.info <http://seq.info> file has not been used in a long time. doug Pablo Polosecki wrote: Hi all, I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message: Setting TER to .10000000000000000000 /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info <http://seq.info> <http://seq.info> file, /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy The seq.info <http://seq.info> <http://seq.info> file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached. Thank you in advance. Pablo -- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> ------------------------------------------------------------------------ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi,
The command line it's within the attached script, so it might not look as informative whn looked at on its own. However it is:
mkanalysis-sess \ -fsd bold \ -funcstem $funcstem \ -analysis $analysis \ -paradigm $paradigm \ -dt blocked \ -sf sf \ -df df \ -force $tpef_string \ -inorm \ -timewindow ${timewindow} \ -polyfit 2 \ -TR $TR ${TER_string}\ -gammafit $gammafit \ -gammaexp $gammaexp \ -nconditions $nconditions \ -runlistfile $runlistfile \ -mask ${mask_stem} \ -taumax $taumax \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg
On Fri, Feb 18, 2011 at 11:57 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu
wrote:
What is your command-line?
Pablo Polosecki wrote:
Hi,
I forgot to put the version, my bad. The version is 4.5. Thanks, Pablo
On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve < greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
which version are you using? The seq.info http://seq.info file
has not been used in a long time. doug
Pablo Polosecki wrote:
Hi all, I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message: Setting TER to .10000000000000000000 /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info <http://seq.info> <http://seq.info> file, /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy The seq.info <http://seq.info> <http://seq.info> file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached. Thank you in advance. Pablo -- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Can you send the actual command without any variables? thanks doug
Pablo Polosecki wrote:
Hi,
The command line it's within the attached script, so it might not look as informative whn looked at on its own. However it is:
mkanalysis-sess \ -fsd bold \ -funcstem $funcstem \ -analysis $analysis \ -paradigm $paradigm \ -dt blocked \ -sf sf \ -df df \ -force $tpef_string \ -inorm \ -timewindow ${timewindow} \ -polyfit 2 \ -TR $TR ${TER_string}\ -gammafit $gammafit \ -gammaexp $gammaexp \ -nconditions $nconditions \ -runlistfile $runlistfile \ -mask ${mask_stem} \ -taumax $taumax \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg
On Fri, Feb 18, 2011 at 11:57 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
What is your command-line? Pablo Polosecki wrote: Hi, I forgot to put the version, my bad. The version is 4.5. Thanks, Pablo On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> wrote: which version are you using? The seq.info <http://seq.info> <http://seq.info> file has not been used in a long time. doug Pablo Polosecki wrote: Hi all, I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message: Setting TER to .10000000000000000000 /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info <http://seq.info> <http://seq.info> <http://seq.info> file, /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy The seq.info <http://seq.info> <http://seq.info> <http://seq.info> file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached. Thank you in advance. Pablo -- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>> ------------------------------------------------------------------------ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Hi Doug,
Sure, here is the command line with all the variables replaced by their actual values.
mkanalysis-sess \ -fsd bold \ -funcstem fmcus2 \ -analysis a1u \ -paradigm face_localizer_monkey.para \ -dt blocked \ -sf sf \ -df df \ -force \ -inorm \ -timewindow 40 \ -polyfit 2 \ -TR 2.0000 \ -gammafit 0 1.25 \ -gammaexp 2 \ -nconditions 7 \ -runlistfile rlf1 \ -mask brain_fmcu \ -taumax 20 \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg
Thanks again,
Pablo
On Fri, Feb 18, 2011 at 12:33 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu
wrote:
Can you send the actual command without any variables? thanks doug
Pablo Polosecki wrote:
Hi,
The command line it's within the attached script, so it might not look as informative whn looked at on its own. However it is:
mkanalysis-sess \ -fsd bold \ -funcstem $funcstem \ -analysis $analysis \ -paradigm $paradigm \ -dt blocked \ -sf sf \ -df df \ -force $tpef_string \ -inorm \ -timewindow ${timewindow} \ -polyfit 2 \ -TR $TR ${TER_string}\ -gammafit $gammafit \ -gammaexp $gammaexp \ -nconditions $nconditions \ -runlistfile $runlistfile \ -mask ${mask_stem} \ -taumax $taumax \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg
On Fri, Feb 18, 2011 at 11:57 AM, Douglas N Greve < greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
What is your command-line?
Pablo Polosecki wrote:
Hi, I forgot to put the version, my bad. The version is 4.5. Thanks, Pablo On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> wrote: which version are you using? The seq.info <http://seq.info> <http://seq.info> file has not been used in a long time. doug Pablo Polosecki wrote: Hi all, I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message: Setting TER to .10000000000000000000/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info http://seq.info http://seq.info http://seq.info file,
/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
The seq.info <http://seq.info> <http://seq.info> <http://seq.info> file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached. Thank you in advance. Pablo -- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>>
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Please ignore the extra line btween the line starting with -paradigm and the one with -dt. It somehow sneaked in there, but it's not there when I call the command.
On Fri, Feb 18, 2011 at 2:32 PM, Pablo Polosecki < ppolosecki@mail.rockefeller.edu> wrote:
Hi Doug,
Sure, here is the command line with all the variables replaced by their actual values.
mkanalysis-sess \ -fsd bold \ -funcstem fmcus2 \ -analysis a1u \ -paradigm face_localizer_monkey.para \
-dt blocked \ -sf sf \ -df df \ -force \ -inorm \ -timewindow 40 \ -polyfit 2 \ -TR 2.0000 \ -gammafit 0 1.25 \ -gammaexp 2 \ -nconditions 7 \ -runlistfile rlf1 \ -mask brain_fmcu \ -taumax 20 \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextregThanks again,
Pablo
On Fri, Feb 18, 2011 at 12:33 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote:
Can you send the actual command without any variables? thanks doug
Pablo Polosecki wrote:
Hi,
The command line it's within the attached script, so it might not look as informative whn looked at on its own. However it is:
mkanalysis-sess \ -fsd bold \ -funcstem $funcstem \ -analysis $analysis \ -paradigm $paradigm \ -dt blocked \ -sf sf \ -df df \ -force $tpef_string \ -inorm \ -timewindow ${timewindow} \ -polyfit 2 \ -TR $TR ${TER_string}\ -gammafit $gammafit \ -gammaexp $gammaexp \ -nconditions $nconditions \ -runlistfile $runlistfile \ -mask ${mask_stem} \ -taumax $taumax \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg
On Fri, Feb 18, 2011 at 11:57 AM, Douglas N Greve < greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
What is your command-line?
Pablo Polosecki wrote:
Hi, I forgot to put the version, my bad. The version is 4.5. Thanks, Pablo On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> wrote: which version are you using? The seq.info <http://seq.info> <http://seq.info> file has not been used in a long time. doug Pablo Polosecki wrote: Hi all, I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message: Setting TER to .10000000000000000000/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info http://seq.info http://seq.info http://seq.info file,
/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
The seq.info <http://seq.info> <http://seq.info> <http://seq.info> file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached. Thank you in advance. Pablo -- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>>
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
When I run this in version 4, it runs fine. Can you send me the full terminal output?
Pablo Polosecki wrote:
Hi Doug,
Sure, here is the command line with all the variables replaced by their actual values.
mkanalysis-sess \ -fsd bold \ -funcstem fmcus2 \ -analysis a1u \ -paradigm face_localizer_monkey.para \ -dt blocked \ -sf sf \ -df df \ -force \ -inorm \ -timewindow 40 \ -polyfit 2 \ -TR 2.0000 \ -gammafit 0 1.25 \ -gammaexp 2 \ -nconditions 7 \ -runlistfile rlf1 \ -mask brain_fmcu \ -taumax 20 \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg
Thanks again,
Pablo
On Fri, Feb 18, 2011 at 12:33 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Can you send the actual command without any variables? thanks doug Pablo Polosecki wrote: Hi, The command line it's within the attached script, so it might not look as informative whn looked at on its own. However it is: mkanalysis-sess \ -fsd bold \ -funcstem $funcstem \ -analysis $analysis \ -paradigm $paradigm \ -dt blocked \ -sf sf \ -df df \ -force $tpef_string \ -inorm \ -timewindow ${timewindow} \ -polyfit 2 \ -TR $TR ${TER_string}\ -gammafit $gammafit \ -gammaexp $gammaexp \ -nconditions $nconditions \ -runlistfile $runlistfile \ -mask ${mask_stem} \ -taumax $taumax \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg On Fri, Feb 18, 2011 at 11:57 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> wrote: What is your command-line? Pablo Polosecki wrote: Hi, I forgot to put the version, my bad. The version is 4.5. Thanks, Pablo On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>> wrote: which version are you using? The seq.info <http://seq.info> <http://seq.info> <http://seq.info> file has not been used in a long time. doug Pablo Polosecki wrote: Hi all, I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message: Setting TER to .10000000000000000000 /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info <http://seq.info> <http://seq.info> <http://seq.info> <http://seq.info> file, /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy The seq.info <http://seq.info> <http://seq.info> <http://seq.info> <http://seq.info> file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached. Thank you in advance. Pablo -- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>>> ------------------------------------------------------------------------ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Hi, The full terminal output is pretty much what I sent previously:
Processing analysis: a1u INFO: analysis a1u exists, but overwrite forced by user. Setting TER to .10000000000000000000 /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info file, /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
Is there a log file that the command spits out and I should send?
Best, Pablo
On Fri, Feb 18, 2011 at 5:32 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
When I run this in version 4, it runs fine. Can you send me the full terminal output?
Pablo Polosecki wrote:
Hi Doug,
Sure, here is the command line with all the variables replaced by their actual values.
mkanalysis-sess \ -fsd bold \ -funcstem fmcus2 \ -analysis a1u \ -paradigm face_localizer_monkey.para \ -dt blocked \ -sf sf \ -df df \ -force \ -inorm \ -timewindow 40 \ -polyfit 2 \ -TR 2.0000 \ -gammafit 0 1.25 \ -gammaexp 2 \ -nconditions 7 \ -runlistfile rlf1 \ -mask brain_fmcu \ -taumax 20 \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg
Thanks again,
Pablo
On Fri, Feb 18, 2011 at 12:33 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Can you send the actual command without any variables? thanks doug
Pablo Polosecki wrote:
Hi, The command line it's within the attached script, so it might not look as informative whn looked at on its own. However it is: mkanalysis-sess \ -fsd bold \ -funcstem $funcstem \ -analysis $analysis \ -paradigm $paradigm \ -dt blocked \ -sf sf \ -df df \ -force $tpef_string \ -inorm \ -timewindow ${timewindow} \ -polyfit 2 \ -TR $TR ${TER_string}\ -gammafit $gammafit \ -gammaexp $gammaexp \ -nconditions $nconditions \ -runlistfile $runlistfile \ -mask ${mask_stem} \ -taumax $taumax \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg On Fri, Feb 18, 2011 at 11:57 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> wrote: What is your command-line? Pablo Polosecki wrote: Hi, I forgot to put the version, my bad. The version is 4.5. Thanks, Pablo On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>> wrote: which version are you using? The seq.info <http://seq.info> <http://seq.info> <http://seq.info> file has not been used in a long time. doug Pablo Polosecki wrote: Hi all, I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message: Setting TER to .10000000000000000000/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info http://seq.info http://seq.info http://seq.info http://seq.info file,
/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
The seq.info <http://seq.info> <http://seq.info> <http://seq.info> <http://seq.info> file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached. Thank you in advance. Pablo -- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>>>
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E < http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Hi all,
Just for the record I comment that the problem was solved. It was the name of the sequence, which containted the sting "TR". This messed up the sanity checks mkanalysis-sess. Thank you very much taking a look at it. Best, Pablo
On Fri, Feb 18, 2011 at 5:48 PM, Pablo Polosecki < ppolosecki@mail.rockefeller.edu> wrote:
Hi, The full terminal output is pretty much what I sent previously:
Processing analysis: a1u INFO: analysis a1u exists, but overwrite forced by user.
Setting TER to .10000000000000000000 /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info file, /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
Is there a log file that the command spits out and I should send?
Best, Pablo
On Fri, Feb 18, 2011 at 5:32 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote:
When I run this in version 4, it runs fine. Can you send me the full terminal output?
Pablo Polosecki wrote:
Hi Doug,
Sure, here is the command line with all the variables replaced by their actual values.
mkanalysis-sess \ -fsd bold \ -funcstem fmcus2 \ -analysis a1u \ -paradigm face_localizer_monkey.para \ -dt blocked \ -sf sf \ -df df \ -force \ -inorm \ -timewindow 40 \ -polyfit 2 \ -TR 2.0000 \ -gammafit 0 1.25 \ -gammaexp 2 \ -nconditions 7 \ -runlistfile rlf1 \ -mask brain_fmcu \ -taumax 20 \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg
Thanks again,
Pablo
On Fri, Feb 18, 2011 at 12:33 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Can you send the actual command without any variables? thanks doug
Pablo Polosecki wrote:
Hi, The command line it's within the attached script, so it might not look as informative whn looked at on its own. However it is: mkanalysis-sess \ -fsd bold \ -funcstem $funcstem \ -analysis $analysis \ -paradigm $paradigm \ -dt blocked \ -sf sf \ -df df \ -force $tpef_string \ -inorm \ -timewindow ${timewindow} \ -polyfit 2 \ -TR $TR ${TER_string}\ -gammafit $gammafit \ -gammaexp $gammaexp \ -nconditions $nconditions \ -runlistfile $runlistfile \ -mask ${mask_stem} \ -taumax $taumax \ -acfbins 1 \ -fix-acf \ -noautostimdur \ -motioncor -mcextreg On Fri, Feb 18, 2011 at 11:57 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> wrote: What is your command-line? Pablo Polosecki wrote: Hi, I forgot to put the version, my bad. The version is 4.5. Thanks, Pablo On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>> wrote: which version are you using? The seq.info <http://seq.info> <http://seq.info> <http://seq.info> file has not been used in a long time. doug Pablo Polosecki wrote: Hi all, I am trying to define an analysis for a block-based functional scan using mkanalysis-sess. When I run it, I get the following output with an error message: Setting TER to .10000000000000000000/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy ERROR: bad format for seq.info http://seq.info http://seq.info http://seq.info http://seq.info file,
/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
The seq.info <http://seq.info> <http://seq.info> <http://seq.info> <http://seq.info> file (attached) was produced by the unpacksdcmdir command and it looks no different from other ones I have seen. The information there seems correct to me. Could someone perhaps point out possible reasons why this could happen? The script I use to call mkanalysis-sess containing all the parameters used is attached. Thank you in advance. Pablo -- Pablo Polosecki Graduate Fellow Laboratory of Neural Systems The Rockefeller University 1230 York Avenue, Box 9 New York, NY 10065 Tel: 212-327-7699 (Lab) 917-842-2510 (Cell) email: ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu> <mailto:ppolosecki@mail.rockefeller.edu <mailto:ppolosecki@mail.rockefeller.edu>>>>
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E < http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Pablo Polosecki