New subject: if: Expression Syntax - preproc-sess

5 Mar 2024

      External Email - Use Caution
Here -debug outputs
preproc-sess -s 091223sbj01m_tp1 -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -debug
set echo = 1 ;
breaksw
breaksw
end
end
while ( $#argv != 0 )
while ( 0 != 0 )
goto parse_args_return ;
goto parse_args_return
foreach grp ( $grpdefs )
foreach grp ( )
goto check_params ;
goto check_params
if ( $#SessList == 0 ) then
if ( 1 == 0 ) then
if ( $#SearchPathList == 0 ) then
if ( 0 == 0 ) then
set SearchPathList = "." ;
set SearchPathList = .
endif
endif
goto check_params_return ;
goto check_params_return
set UniqueList = ( ) ;
set UniqueList = ( )
foreach d ( $SearchPathList )
foreach d ( . )
if ( ! -e $d ) then
if ( ! -e . ) then
set IsUnique = 1 ;
set IsUnique = 1
foreach u ( $UniqueList )
foreach u ( )
if ( $IsUnique ) set UniqueList = ( $UniqueList $d ) ;
if ( 1 ) set UniqueList = ( . )
set UniqueList = ( . )
end
end
set SearchPathList = ( $UniqueList ) ;
set SearchPathList = ( . )
set errs = 0 ;
set errs = 0
set SessPath = ( ) ;
set SessPath = ( )
foreach sess ( $SessList )
foreach sess ( 091223sbj01m_tp1 )
set tmp = ( ) ;
set tmp = ( )
foreach d ( $SearchPathList )
foreach d ( . )
set stst = $d/$sess
set stst = ./091223sbj01m_tp1
if ( -d $stst ) then
if ( -d ./091223sbj01m_tp1 ) then
if ( ! -r $stst ) then
if ( ! -r ./091223sbj01m_tp1 ) then
pushd $stst > /dev/null ;
pushd ./091223sbj01m_tp1
set tmp = ( $tmp `$PWDCMD` ) ;
set tmp = ( `$PWDCMD` )
pwd
popd > /dev/null ;
popd
endif
endif
end
end
set nfound = ( $#tmp ) ;
set nfound = ( 1 )
if ( $nfound == 0 ) then
if ( 1 == 0 ) then
if ( $nfound > 1 ) then
if ( 1 > 1 ) then
set SessPath = ( $SessPath $tmp ) ;
set SessPath = ( /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 )
end
end
set UniqueList = ( ) ;
set UniqueList = ( )
foreach s ( $SessPath )
foreach s ( /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 )
set IsUnique = 1 ;
set IsUnique = 1
foreach u ( $UniqueList )
foreach u ( )
if ( ! $IsUnique && ! $AllowRedundant ) then
if ( ! 1 && ! 0 ) then
set UniqueList = ( $UniqueList $s ) ;
set UniqueList = ( /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 )
endif
endif
end
end
echo $SessPath
echo /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1
exit $errs ;
exit 0
set echo = 1 ;
breaksw
breaksw
end
end
while ( $#argv != 0 )
while ( 0 != 0 )
goto parse_args_return ;
goto parse_args_return
goto check_params ;
goto check_params
if ( $#instem == 0 ) set instem = "f" ;
if ( 0 == 0 ) set instem = f
set instem = f
if ( $#fsd == 0 ) then
if ( 1 == 0 ) then
if ( $DoMC || $DoReg ) then
if ( 0 || 1 ) then
if ( $PerRun == 0 && $PerSess == 0 ) then
if ( 1 == 0 && 0 == 0 ) then
endif
endif
if ( $DoMC ) then
if ( 0 ) then
set mcoutstem = $instem ;
set mcoutstem = f
endif
endif
if ( $DoSTC ) then
if ( 1 ) then
if ( $#stcinstem == 0 ) set stcinstem = $mcoutstem
if ( 0 == 0 ) set stcinstem = f
set stcinstem = f
if ( $#stcoutstem == 0 ) then
if ( 0 == 0 ) then
if ( $#SliceOrder ) set stcoutstem = $stcinstem.$SliceOrder
if ( 1 ) set stcoutstem = f.up
set stcoutstem = f.up
if ( $#SliceDelayFile ) set stcoutstem = $stcinstem.sdf
if ( 0 ) set stcoutstem = f.sdf
endif
endif
else
else
if ( $ToSurf || $ToMNI305 || $ToCVS ) then
if ( 1 || 1 || 0 ) then
if ( $#fwhm == 0 ) then
if ( 1 == 0 ) then
set DoVolSmooth = 0 ;
set DoVolSmooth = 0
set DoSurfSmooth = 0 ;
set DoSurfSmooth = 0
set DoSmooth = 0 ;
set DoSmooth = 0
endif
endif
if ( $DoSmooth ) then
if ( 0 ) then
if ( $DoInorm && $#inormstem == 0 ) then
if ( 0 && 0 == 0 ) then
if ( ! $DoMC && ! $DoSTC && ! $DoSmooth && ! $DoMask && ! $DoTemplate ) then
if ( ! 0 && ! 1 && ! 0 && ! 1 && ! 1 ) then
if ( $#ProjFrac && $DoProjAvg ) then
if ( 0 && 0 ) then
if ( $UseB0DC && $#ProjFracExpKey ) then
if ( 0 && 0 ) then
if ( $#regfile == 0 ) then
if ( 0 == 0 ) then
if ( ! $UseB0DC ) set regfile = register.dof$RegDOF.lta
if ( ! 0 ) set regfile = register.dof6.lta
set regfile = register.dof6.lta
if ( $UseB0DC ) set regfile = register.dof$RegDOF.b0dc.lta
if ( 0 ) set regfile = register.dof6.b0dc.lta
endif
endif
if ( $#SliceDelayFile != 0 && $#SliceOrder != 0 ) then
if ( 0 != 0 && 1 != 0 ) then
goto check_params_return ;
goto check_params_return
if ( $nolog ) then
if ( 0 ) then
set logdir = log ;
set logdir = log
mkdir -p $logdir
mkdir -p log
if ( ! -e $logdir ) then
if ( ! -e log ) then
if ( $#SessList > 1 ) then
if ( 1 > 1 ) then
set sb = `basename $SessList`
set sb = `basename $SessList`
basename /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1
set LF = $logdir/preproc-sess.$sb.log
set LF = log/preproc-sess.091223sbj01m_tp1.log
endif
endif
if ( -e $LF ) mv $LF $LF.old
if ( -e log/preproc-sess.091223sbj01m_tp1.log ) mv log/preproc-sess.091223sbj01m_tp1.log log/preproc-sess.091223sbj01m_tp1.log.old
mv log/preproc-sess.091223sbj01m_tp1.log log/preproc-sess.091223sbj01m_tp1.log.old
endif
endif
endif
endif
echo "--------------------------------------------------------------"
echo --------------------------------------------------------------
--------------------------------------------------------------
echo "preproc-sess logfile is $LF"
echo preproc-sess logfile is log/preproc-sess.091223sbj01m_tp1.log
preproc-sess logfile is log/preproc-sess.091223sbj01m_tp1.log
echo "--------------------------------------------------------------"
echo --------------------------------------------------------------
--------------------------------------------------------------
echo "preproc-sess log file" >> $LF
echo preproc-sess log file
echo $VERSION | tee -a $LF
echo FreeSurferEnv.csh 7.4.1
tee -a log/preproc-sess.091223sbj01m_tp1.log
FreeSurferEnv.csh 7.4.1
echo "$user" | tee -a $LF
echo stefano
tee -a log/preproc-sess.091223sbj01m_tp1.log
stefano
echo "setenv FREESURFER_HOME $FREESURFER_HOME" | tee -a $LF
echo setenv FREESURFER_HOME /Applications/freesurfer/7.4.1
tee -a log/preproc-sess.091223sbj01m_tp1.log
setenv FREESURFER_HOME /Applications/freesurfer/7.4.1
echo "setenv SUBJECTS_DIR $SUBJECTS_DIR" | tee -a $LF
echo setenv SUBJECTS_DIR /Users/stefano/Desktop/MODAFINIL/MRI
tee -a log/preproc-sess.091223sbj01m_tp1.log
setenv SUBJECTS_DIR /Users/stefano/Desktop/MODAFINIL/MRI
uname -a | tee -a $LF
uname -a
tee -a log/preproc-sess.091223sbj01m_tp1.log
Darwin IMACSTEFANO01.local 21.6.0 Darwin Kernel Version 21.6.0: Mon Dec 19 20:44:01 PST 2022; root:xnu-8020.240.18~2/RELEASE_X86_64 x86_64
pwd | tee -a $LF
pwd
tee -a log/preproc-sess.091223sbj01m_tp1.log
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA
echo $0 | tee -a $LF
echo /Applications/freesurfer/7.4.1/fsfast/bin/preproc-sess
tee -a log/preproc-sess.091223sbj01m_tp1.log
/Applications/freesurfer/7.4.1/fsfast/bin/preproc-sess
echo $inputargs | tee -a $LF
echo -s 091223sbj01m_tp1 -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -debug
tee -a log/preproc-sess.091223sbj01m_tp1.log
-s 091223sbj01m_tp1 -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -debug
date | tee -a $LF
date
tee -a log/preproc-sess.091223sbj01m_tp1.log
Lun 26 Feb 2024 18:46:29 CET
echo "instem   $instem " | tee -a $LF
echo instem   f 
tee -a log/preproc-sess.091223sbj01m_tp1.log
instem   f 
echo "mc   $DoMC     $mcinstem $mcoutstem " | tee -a $LF
echo mc   0      f 
tee -a log/preproc-sess.091223sbj01m_tp1.log
mc   0      f 
echo "stc  $DoSTC    $stcinstem $stcoutstem" | tee -a $LF
echo stc  1    f f.up
tee -a log/preproc-sess.091223sbj01m_tp1.log
stc  1    f f.up
echo "sm   $DoVolSmooth $sminstem $smoutstem " | tee -a $LF
echo sm   0   
tee -a log/preproc-sess.091223sbj01m_tp1.log
sm   0   
echo "mask $DoMask   $maskstem" | tee -a $LF
echo mask 1   brain
tee -a log/preproc-sess.091223sbj01m_tp1.log
mask 1   brain
set ProjectDir = `pwd` ;
set ProjectDir = `pwd`
pwd
set StartTime = `date` ;
set StartTime = `date`
date
foreach sess ( $SessList )
foreach sess ( /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 )
set sessid = `basename $sess` ;
set sessid = `basename $sess`
basename /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1
set sessparent = `dirname $sess` ;
set sessparent = `dirname $sess`
dirname /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1
if ( -w . && $nolog != 1 ) then
if ( -w . && 0 != 1 ) then
mkdir -p log
mkdir -p log
set LF = $ProjectDir/log/preproc-$sessid-$fsd.log
set LF = /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
rm -f $LF
rm -f /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
else
else
echo "preproc-sess" >> $LF
echo preproc-sess
echo $sessid >> $LF
echo 091223sbj01m_tp1
echo $VERSION >> $LF
echo FreeSurferEnv.csh 7.4.1
uname -a >> $LF
uname -a
date >> $LF
date
pwd >> $LF
pwd
echo $inputargs >> $LF
echo -s 091223sbj01m_tp1 -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -debug
echo "ProjectDir $ProjectDir" >> $LF
echo ProjectDir /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA
if ( $DoTemplate ) then
if ( 1 ) then
set cmd = ( mktemplate-sess -s $sessid -d $sessparent -fsd $fsd -funcstem $instem )
set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f )
if ( $#RunListFile ) set cmd = ( $cmd -rlf $RunListFile ) ;
if ( 0 ) set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -rlf )
if ( $nolog ) set cmd = ( $cmd -nolog ) ;
if ( 0 ) set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -nolog )
if ( $UpdateOnly ) set cmd = ( $cmd -update ) ;
if ( 1 ) set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update )
set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update )
echo "$sessid Template -----------------------------" | & tee -a $LF
echo 091223sbj01m_tp1 Template -----------------------------
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
091223sbj01m_tp1 Template -----------------------------
echo $cmd | & tee -a $LF
echo mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update
$cmd | & tee -a $LF
mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
Session: /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 ----------------
Lun 26 Feb 2024 18:46:29 CET
Detected input format at nii.gz
091223sbj01m_tp1 Update not needed
  Run: 001 ----------------
  Lun 26 Feb 2024 18:46:30 CET
  091223sbj01m_tp1 001 Update not needed
  Run: 002 ----------------
  Lun 26 Feb 2024 18:46:30 CET
  091223sbj01m_tp1 002 Update not needed
  Run: 003 ----------------
  Lun 26 Feb 2024 18:46:30 CET
  091223sbj01m_tp1 003 Update not needed
Lun 26 Feb 2024 18:46:30 CET
mktemplate-sess completed 
if ( $status ) exit 1 ;
if ( 0 ) exit 1
endif
endif
if ( $DoReg ) then
if ( 1 ) then
set cmd = ( register-sess -s $sessid -d $sessparent -fsd $fsd -delete-dat )
set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat )
set cmd = ( $cmd -dof $RegDOF -$contrast )
set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold )
if ( $#RunListFile ) set cmd = ( $cmd -rlf $RunListFile ) ;
if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -rlf )
if ( $PerRun ) set cmd = ( $cmd -per-run )
if ( 1 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run )
set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run )
if ( $PerSess ) set cmd = ( $cmd -per-session )
if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -per-session )
if ( $nolog ) set cmd = ( $cmd -nolog ) ;
if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -nolog )
if ( $UpdateOnly ) set cmd = ( $cmd -update ) ;
if ( 1 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update )
set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update )
if ( $UseB0DC ) set cmd = ( $cmd -b0dc )
if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -b0dc )
if ( $InitCoReg ) set cmd = ( $cmd -init-coreg )
if ( 1 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg )
set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg )
if ( $InitFSL ) set cmd = ( $cmd -init-fsl )
if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -init-fsl )
if ( $InitSPM ) set cmd = ( $cmd -init-spm )
if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -init-spm )
if ( $InitHeader ) set cmd = ( $cmd -init-header )
if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -init-header )
if ( $#IntermediateFSD ) set cmd = ( $cmd -bbr-int $IntermediateFSD $IntermediateStem )
if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -bbr-int )
if ( $#BBRXopts ) set cmd = ( $cmd -bbr-xopts $BBRXopts )
if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -bbr-xopts )
echo "$sessid Registration -----------------------------" | & tee -a $LF
echo 091223sbj01m_tp1 Registration -----------------------------
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
091223sbj01m_tp1 Registration -----------------------------
echo $cmd | & tee -a $LF
echo register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg
$cmd | & tee -a $LF
register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
--------------------------------------------------------------
register-sess logfile is /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/register-sess.091223sbj01m_tp1.log
--------------------------------------------------------------
Lun 26 Feb 2024 18:46:30 CET
setenv SUBJECTS_DIR /Users/stefano/Desktop/MODAFINIL/MRI
cd /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA
/Applications/freesurfer/7.4.1/fsfast/bin/register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg
freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460
Darwin IMACSTEFANO01.local 21.6.0 Darwin Kernel Version 21.6.0: Mon Dec 19 20:44:01 PST 2022; root:xnu-8020.240.18~2/RELEASE_X86_64 x86_64
Session: /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 ----------------
Lun 26 Feb 2024 18:46:30 CET
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1
  Run: 001 ----------------
Lun 26 Feb 2024 18:46:30 CET
Update not needed
  Run: 002 ----------------
Lun 26 Feb 2024 18:46:30 CET
Update not needed
  Run: 003 ----------------
Lun 26 Feb 2024 18:46:30 CET
Update not needed
Lun 26 Feb 2024 18:46:30 CET
register-sess completed 
if ( $status ) exit 1 ;
if ( 0 ) exit 1
endif
endif
if ( $DoMask ) then
if ( 1 ) then
set cmd = ( mkbrainmask-sess -maskstem $maskstem )
set cmd = ( mkbrainmask-sess -maskstem brain )
set cmd = ( $cmd -fsd $fsd )
set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest )
set cmd = ( $cmd -s $sessid -d $sessparent )
set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA )
if ( $PerRun ) set cmd = ( $cmd -per-run )
if ( 1 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run )
set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run )
if ( $PerSess ) set cmd = ( $cmd -per-session )
if ( 0 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -per-session )
if ( $#RunListFile ) set cmd = ( $cmd -rlf $RunListFile ) ;
if ( 0 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -rlf )
if ( $nolog ) set cmd = ( $cmd -nolog ) ;
if ( 0 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -nolog )
if ( $UpdateOnly ) set cmd = ( $cmd -update ) ;
if ( 1 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update )
set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update )
if ( $UseB0DC ) set cmd = ( $cmd -b0dc )
if ( 0 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update -b0dc )
if ( $RegDOF != 6 ) set cmd = ( $cmd -dof $RegDOF )
if ( 6 != 6 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update -dof 6 )
echo "$sessid Mask ------------------------" | & tee -a $LF
echo 091223sbj01m_tp1 Mask ------------------------
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
091223sbj01m_tp1 Mask ------------------------
echo $cmd | & tee -a $LF
echo mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update
$cmd | & tee -a $LF
mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
------------------------------------------------
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 
Lun 26 Feb 2024 18:46:30 CET
091223sbj01m_tp1 Update not needed for session-level mask
091223sbj01m_tp1 Update not needed for run 001 mask
091223sbj01m_tp1 Update not needed for run 002 mask
091223sbj01m_tp1 Update not needed for run 003 mask
091223sbj01m_tp1 Update not needed for run 001 meanval
091223sbj01m_tp1 Update not needed for run 002 meanval
091223sbj01m_tp1 Update not needed for run 003 meanval
Lun 26 Feb 2024 18:46:31 CET
mkbrainmask-sess done
if ( $status ) exit 1 ;
if ( 0 ) exit 1
endif
endif
if ( $DoMC ) then
if ( 0 ) then
if ( $DoSTC ) then
if ( 1 ) then
set cmd = ( stc-sess -i $stcinstem -o $stcoutstem -ngroups $nSliceGroups )
set cmd = ( stc-sess -i f -o f.up -ngroups 1 )
if ( $#SliceOrder ) set cmd = ( $cmd -so $SliceOrder )
if ( 1 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up )
set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up )
if ( $#SliceDelayFile ) set cmd = ( $cmd -sdf $SliceDelayFile )
if ( 0 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -sdf )
set cmd = ( $cmd -s $sessid -d $sessparent -fsd $fsd )
set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest )
if ( $#RunListFile != 0 ) set cmd = ( $cmd -rlf $RunListFile ) ;
if ( 0 != 0 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -rlf )
if ( $nolog ) set cmd = ( $cmd -nolog ) ;
if ( 0 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -nolog )
if ( $UpdateOnly ) set cmd = ( $cmd -update ) ;
if ( 1 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update )
set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update )
echo "$sessid STC -----------------------------" | & tee -a $LF
echo 091223sbj01m_tp1 STC -----------------------------
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
091223sbj01m_tp1 STC -----------------------------
echo $cmd | & tee -a $LF
echo stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update
$cmd | & tee -a $LF
stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
Lun 26 Feb 2024 18:46:31 CET
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA
/Applications/freesurfer/7.4.1/fsfast/bin/stc-sess
-i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update
FreeSurferEnv.csh 7.4.1
IMACSTEFANO01.local
091223sbj01m_tp1 -----------------
Lun 26 Feb 2024 18:46:31 CET
-rw-r--r--  1 stefano  staff  19539533  8 Feb 09:29 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/f.up.nii.gz
-rwx------  1 stefano  staff  19504393  7 Feb 08:32 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/f.nii.gz
Update not needed
-rw-r--r--  1 stefano  staff  19734829  8 Feb 09:29 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/002/f.up.nii.gz
-rwx------  1 stefano  staff  19701816  7 Feb 08:32 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/002/f.nii.gz
Update not needed
-rw-r--r--  1 stefano  staff  20008834  8 Feb 09:29 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/003/f.up.nii.gz
-rwx------  1 stefano  staff  19975502  7 Feb 08:32 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/003/f.nii.gz
Update not needed
Started at Lun 26 Feb 2024 18:46:31 CET
Ended   at Lun 26 Feb 2024 18:46:31 CET
stc-sess Done
if ( $status ) exit 1 ;
if ( 0 ) exit 1
endif
endif
if ( $ToSurf ) then
if ( 1 ) then
set cmd = ( rawfunc2surf-sess -fwhm $fwhm )
set cmd = ( rawfunc2surf-sess -fwhm 0 )
set cmd = ( $cmd -s $sessid -d $sessparent -fsd $fsd )
set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest )
if ( "$hemi" == lh || "$hemi" == rh ) set cmd = ( $cmd -hemi $hemi )
if ( lhrh == lh || lhrh == rh ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -hemi lhrh )
if ( $subject == self ) set cmd = ( $cmd -self )
if ( fsaverage == self ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -self )
if ( $subject != self ) set cmd = ( $cmd -trgsubject $subject )
if ( fsaverage != self ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage )
set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage )
if ( $#RunListFile != 0 ) set cmd = ( $cmd -rlf $RunListFile ) ;
if ( 0 != 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -rlf )
if ( $#SliceOrder ) set cmd = ( $cmd -stc $SliceOrder )
if ( 1 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up )
set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up )
if ( $#SliceDelayFile ) set cmd = ( $cmd -sdf $SliceDelayFile )
if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -sdf )
if ( $nolog ) set cmd = ( $cmd -nolog ) ;
if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -nolog )
if ( $UpdateOnly ) set cmd = ( $cmd -update ) ;
if ( 1 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update )
set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update )
if ( $UseB0DC ) set cmd = ( $cmd -b0dc )
if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -b0dc )
if ( $RegDOF != 6 ) set cmd = ( $cmd -dof $RegDOF )
if ( 6 != 6 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -dof 6 )
if ( $PerRun ) set cmd = ( $cmd -per-run )
if ( 1 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run )
set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run )
if ( $PerSess ) set cmd = ( $cmd -per-session )
if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run -per-session )
if ( $#ProjFrac ) set cmd = ( $cmd -projfrac $ProjFrac -expkey $ProjFracExpKey )
if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run -projfrac -expkey )
if ( $#volsurffwhm ) set cmd = ( $cmd -volsurffwhm $volsurffwhm )
if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run -volsurffwhm )
if ( ! $UseCortexLabel ) set cmd = ( $cmd -no-cortex-label )
if ( ! 1 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run -no-cortex-label )
echo "$sessid To Surface -----------------------------" | & tee -a $LF
echo 091223sbj01m_tp1 To Surface -----------------------------
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
091223sbj01m_tp1 To Surface -----------------------------
echo $cmd | & tee -a $LF
echo rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run
$cmd | & tee -a $LF
rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run
tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
instem fmcpr.up
outstem fmcpr.up.sm0.fsaverage.hemi
------------------------------ 
1/1 091223sbj01m_tp1
  1/1 091223sbj01m_tp1 001 lh ---------
    Lun 26 Feb 2024 18:46:32 CET
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
  1/1 091223sbj01m_tp1 002 lh ---------
    Lun 26 Feb 2024 18:46:32 CET
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/002/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
  1/1 091223sbj01m_tp1 003 lh ---------
    Lun 26 Feb 2024 18:46:32 CET
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/003/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
  1/1 091223sbj01m_tp1 001 rh ---------
    Lun 26 Feb 2024 18:46:32 CET
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/masks/brain.fsaverage.rh.pr.nii.gz does not need updating
  1/1 091223sbj01m_tp1 002 rh ---------
    Lun 26 Feb 2024 18:46:32 CET
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/002/masks/brain.fsaverage.rh.pr.nii.gz does not need updating
  1/1 091223sbj01m_tp1 003 rh ---------
    Lun 26 Feb 2024 18:46:32 CET
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/003/masks/brain.fsaverage.rh.pr.nii.gz does not need updating
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/masks/brain.fsaverage.rh.pr.nii.gz does not need updating
  1/1 091223sbj01m_tp1 001 lh ---------
    Lun 26 Feb 2024 18:46:32 CET
ERROR: could not determine file for /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/fmcpr.up
if ( $status ) exit 1 ;
if ( 1 ) exit 1
exit 1
...
Il giorno 23 feb 2024, alle ore 18:32, Stefano Delli Pizzi sdellipizzi@gmail.com ha scritto:
Thank you!
 I have already sent it to you (probabile to Yujing) some days ago. Were they not okay?
Could it be because I'm running data on MacOS? 
If you do preprocessing with -nomc, does it work on your dataset? I've tried it with three different databases.
Regards
Stefano
...
Il giorno 23 feb 2024, alle ore 17:32, Douglas N. Greve dgreve@mgh.harvard.edu ha scritto:
I cannot reproduce this locally. If you still want help, attach logs. You can also try running it with -debug as the first option and capture the copious terminal output.
On 2/6/2024 8:39 AM, Huang, Yujing wrote:
...
Not sure where this happened. Does it produce any log files that you can share? Maybe both logs with and without the -nomc option.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Stefano Delli Pizzi
Sent: Saturday, February 3, 2024 2:33 PM
To: freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] if: Expression Syntax - preproc-sess
    External Email - Use Caution        

Hello FreeSurfer Developers,
I'm attempting to run preproc-sess with -nomc option
preproc-sess -s subj -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest 
-per-run -sliceorder up -force
if: Expression Syntax.
This error occurred before to create the file with slice timing correction
The error did not occur when I run the preproc-sess command line without the 
-nomc option.
I've searched the list and no similar errors have been reported. Does anyone 
have any thoughts on how to trouble-shoot this one?
FreeSurfer version: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460
Platform: Darwin Kernel Version 21.6.0

Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1RGtmPM0hlMCo8Zjca56xbEFgG_xp75QgnTr8BS72v1bhOv... https://secure-web.cisco.com/1RGtmPM0hlMCo8Zjca56xbEFgG_xp75QgnTr8BS72v1bhOvgOaZ56wxierTWw6aBChhoVApCZZnLHEwoaPJUXDZjLIYQWnIhWYIKA-kNGVofBqirV7YvFc0TzAvadQSe0ANpIPTirgyFhqWIsN01-V7zxPFtlAKU7-jnQRLOGaOKtsYa2M5e8xaAqo1tCOHGrqCDXXK0uWOPpNk8LVSTl45asWLq7K0W8HiXtwSsMDXZn3Dg4abF6HqbH6riW2Hup5GFRBxuLunNBo-tObZ41fwyGjQtiw1Bsk6ZmGr4xEVZiHNPzZRSvZTm9qGlRUwD-3sa3qnKpcYAqISaE9OBjcA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer

Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1RGtmPM0hlMCo8Zjca56xbEFgG_xp75QgnTr8BS72v1bhOv...
The information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1c9_PdX0MS4Dp1t3_S7ig7NDDRwU6Z42WDROfxYfWwU2LWp... https://secure-web.cisco.com/1c9_PdX0MS4Dp1t3_S7ig7NDDRwU6Z42WDROfxYfWwU2LWpy7fLRlajLPdI24GmTLyeRwUxdtbRhdNGpJz0LxdLMfTUhTaZnYI7t6jg1S79ySiWtmHt47jqMUN7YzVP2rKqsFDJzJV4FAVcveIuD752QvvC6R1rRBHNNL21uJWZJhLdLIkvC_YULXyllF7INXeoFFDT-xAWnBpzOEoNlH4IwHXuXSEymB_l1j_H5VjENjjmP1Lr8Tf5tVAZwT4pBbjCVjR2uN-YcISFLtE7Z8CLOlLP4f-d8w6PQBj1aSDNNgQHNhPgOON5KVaykrQilv7_--OjpDE5aRIwRboA-unA/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline .

Re: [Freesurfer] if: Expression Syntax - preproc-sess

register-sess logfile is /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/register-sess.091223sbj01m_tp1.log

register-sess logfile is /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/register-sess.091223sbj01m_tp1.log