can you send the entire terminal output?
On 3/8/2024 3:46 AM, Stefano Delli Pizzi wrote:
External Email - Use Caution
Thank you very much. After the updata that you suggested, this error occurs: could not determine file for /Volumes/mnu/MRI/PPMI/NIFTI/FreeSurfer/rs-fMRI/XXX/rest/001/fmcpr.even Stefano
Il giorno 5 mar 2024, alle ore 16:26, Douglas N. Greve dgreve@mgh.harvard.edu ha scritto:
I've made a patch to try to fix this. I've attached 3 files. Copy them to $FREESURFER/fsfast/bin. Make them executable by running cd $FREESURFER/fsfast/bin chmod a+x rawfunc2surf-sess rawfunc2tal-sess preproc-sess Let me know if that works
On 3/5/2024 2:28 AM, Stefano Delli Pizzi wrote:
External Email - Use Caution
Here -debug outputs
preproc-sess -s 091223sbj01m_tp1 -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -debug set echo = 1 ; breaksw breaksw
end end while ( $#argv != 0 ) while ( 0 != 0 ) goto parse_args_return ; goto parse_args_return
foreach grp ( $grpdefs ) foreach grp ( )
goto check_params ; goto check_params
if ( $#SessList == 0 ) then if ( 1 == 0 ) then
if ( $#SearchPathList == 0 ) then if ( 0 == 0 ) then set SearchPathList = "." ; set SearchPathList = . endif endif
goto check_params_return ; goto check_params_return
set UniqueList = ( ) ; set UniqueList = ( ) foreach d ( $SearchPathList ) foreach d ( . ) if ( ! -e $d ) then if ( ! -e . ) then
set IsUnique = 1 ; set IsUnique = 1 foreach u ( $UniqueList ) foreach u ( ) if ( $IsUnique ) set UniqueList = ( $UniqueList $d ) ; if ( 1 ) set UniqueList = ( . ) set UniqueList = ( . ) end end
set SearchPathList = ( $UniqueList ) ; set SearchPathList = ( . )
set errs = 0 ; set errs = 0
set SessPath = ( ) ; set SessPath = ( ) foreach sess ( $SessList ) foreach sess ( 091223sbj01m_tp1 ) set tmp = ( ) ; set tmp = ( ) foreach d ( $SearchPathList ) foreach d ( . ) set stst = $d/$sess set stst = ./091223sbj01m_tp1 if ( -d $stst ) then if ( -d ./091223sbj01m_tp1 ) then if ( ! -r $stst ) then if ( ! -r ./091223sbj01m_tp1 ) then pushd $stst > /dev/null ; pushd ./091223sbj01m_tp1 set tmp = ( $tmp `$PWDCMD` ) ; set tmp = ( `$PWDCMD` ) pwd popd > /dev/null ; popd endif endif end end set nfound = ( $#tmp ) ; set nfound = ( 1 ) if ( $nfound == 0 ) then if ( 1 == 0 ) then if ( $nfound > 1 ) then if ( 1 > 1 ) then set SessPath = ( $SessPath $tmp ) ; set SessPath = ( /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 ) end end
set UniqueList = ( ) ; set UniqueList = ( ) foreach s ( $SessPath ) foreach s ( /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 ) set IsUnique = 1 ; set IsUnique = 1 foreach u ( $UniqueList ) foreach u ( ) if ( ! $IsUnique && ! $AllowRedundant ) then if ( ! 1 && ! 0 ) then
set UniqueList = ( $UniqueList $s ) ; set UniqueList = ( /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 ) endif endif end end
echo $SessPath echo /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1
exit $errs ; exit 0 set echo = 1 ; breaksw breaksw
end end while ( $#argv != 0 ) while ( 0 != 0 )
goto parse_args_return ; goto parse_args_return
goto check_params ; goto check_params if ( $#instem == 0 ) set instem = "f" ; if ( 0 == 0 ) set instem = f set instem = f
if ( $#fsd == 0 ) then if ( 1 == 0 ) then
if ( $DoMC || $DoReg ) then if ( 0 || 1 ) then if ( $PerRun == 0 && $PerSess == 0 ) then if ( 1 == 0 && 0 == 0 ) then endif endif
if ( $DoMC ) then if ( 0 ) then
set mcoutstem = $instem ; set mcoutstem = f endif endif
if ( $DoSTC ) then if ( 1 ) then if ( $#stcinstem == 0 ) set stcinstem = $mcoutstem if ( 0 == 0 ) set stcinstem = f set stcinstem = f if ( $#stcoutstem == 0 ) then if ( 0 == 0 ) then if ( $#SliceOrder ) set stcoutstem = $stcinstem.$SliceOrder if ( 1 ) set stcoutstem = f.up set stcoutstem = f.up if ( $#SliceDelayFile ) set stcoutstem = $stcinstem.sdf if ( 0 ) set stcoutstem = f.sdf endif endif else else
if ( $ToSurf || $ToMNI305 || $ToCVS ) then if ( 1 || 1 || 0 ) then if ( $#fwhm == 0 ) then if ( 1 == 0 ) then set DoVolSmooth = 0 ; set DoVolSmooth = 0 set DoSurfSmooth = 0 ; set DoSurfSmooth = 0 set DoSmooth = 0 ; set DoSmooth = 0 endif endif
if ( $DoSmooth ) then if ( 0 ) then
if ( $DoInorm && $#inormstem == 0 ) then if ( 0 && 0 == 0 ) then
if ( ! $DoMC && ! $DoSTC && ! $DoSmooth && ! $DoMask && ! $DoTemplate ) then if ( ! 0 && ! 1 && ! 0 && ! 1 && ! 1 ) then
if ( $#ProjFrac && $DoProjAvg ) then if ( 0 && 0 ) then
if ( $UseB0DC && $#ProjFracExpKey ) then if ( 0 && 0 ) then
if ( $#regfile == 0 ) then if ( 0 == 0 ) then if ( ! $UseB0DC ) set regfile = register.dof$RegDOF.lta if ( ! 0 ) set regfile = register.dof6.lta set regfile = register.dof6.lta if ( $UseB0DC ) set regfile = register.dof$RegDOF.b0dc.lta if ( 0 ) set regfile = register.dof6.b0dc.lta endif endif
if ( $#SliceDelayFile != 0 && $#SliceOrder != 0 ) then if ( 0 != 0 && 1 != 0 ) then
goto check_params_return ; goto check_params_return
if ( $nolog ) then if ( 0 ) then
set logdir = log ; set logdir = log mkdir -p $logdir mkdir -p log if ( ! -e $logdir ) then if ( ! -e log ) then
if ( $#SessList > 1 ) then if ( 1 > 1 ) then
set sb = `basename $SessList` set sb = `basename $SessList` basename /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 set LF = $logdir/preproc-sess.$sb.log set LF = log/preproc-sess.091223sbj01m_tp1.log endif endif if ( -e $LF ) mv $LF $LF.old if ( -e log/preproc-sess.091223sbj01m_tp1.log ) mv log/preproc-sess.091223sbj01m_tp1.log log/preproc-sess.091223sbj01m_tp1.log.old mv log/preproc-sess.091223sbj01m_tp1.log log/preproc-sess.091223sbj01m_tp1.log.old endif endif endif endif echo "--------------------------------------------------------------" echo --------------------------------------------------------------
echo "preproc-sess logfile is $LF" echo preproc-sess logfile is log/preproc-sess.091223sbj01m_tp1.log preproc-sess logfile is log/preproc-sess.091223sbj01m_tp1.log echo "--------------------------------------------------------------" echo --------------------------------------------------------------
echo "preproc-sess log file" >> $LF echo preproc-sess log file echo $VERSION | tee -a $LF echo FreeSurferEnv.csh 7.4.1 tee -a log/preproc-sess.091223sbj01m_tp1.log FreeSurferEnv.csh 7.4.1 echo "$user" | tee -a $LF echo stefano tee -a log/preproc-sess.091223sbj01m_tp1.log stefano echo "setenv FREESURFER_HOME $FREESURFER_HOME" | tee -a $LF echo setenv FREESURFER_HOME /Applications/freesurfer/7.4.1 tee -a log/preproc-sess.091223sbj01m_tp1.log setenv FREESURFER_HOME /Applications/freesurfer/7.4.1 echo "setenv SUBJECTS_DIR $SUBJECTS_DIR" | tee -a $LF echo setenv SUBJECTS_DIR /Users/stefano/Desktop/MODAFINIL/MRI tee -a log/preproc-sess.091223sbj01m_tp1.log setenv SUBJECTS_DIR /Users/stefano/Desktop/MODAFINIL/MRI uname -a | tee -a $LF uname -a tee -a log/preproc-sess.091223sbj01m_tp1.log Darwin IMACSTEFANO01.local 21.6.0 Darwin Kernel Version 21.6.0: Mon Dec 19 20:44:01 PST 2022; root:xnu-8020.240.18~2/RELEASE_X86_64 x86_64 pwd | tee -a $LF pwd tee -a log/preproc-sess.091223sbj01m_tp1.log /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA echo $0 | tee -a $LF echo /Applications/freesurfer/7.4.1/fsfast/bin/preproc-sess tee -a log/preproc-sess.091223sbj01m_tp1.log /Applications/freesurfer/7.4.1/fsfast/bin/preproc-sess echo $inputargs | tee -a $LF echo -s 091223sbj01m_tp1 -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -debug tee -a log/preproc-sess.091223sbj01m_tp1.log -s 091223sbj01m_tp1 -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -debug date | tee -a $LF date tee -a log/preproc-sess.091223sbj01m_tp1.log Lun 26 Feb 2024 18:46:29 CET
echo "instem $instem " | tee -a $LF echo instem f tee -a log/preproc-sess.091223sbj01m_tp1.log instem f echo "mc $DoMC $mcinstem $mcoutstem " | tee -a $LF echo mc 0 f tee -a log/preproc-sess.091223sbj01m_tp1.log mc 0 f echo "stc $DoSTC $stcinstem $stcoutstem" | tee -a $LF echo stc 1 f f.up tee -a log/preproc-sess.091223sbj01m_tp1.log stc 1 f f.up echo "sm $DoVolSmooth $sminstem $smoutstem " | tee -a $LF echo sm 0 tee -a log/preproc-sess.091223sbj01m_tp1.log sm 0 echo "mask $DoMask $maskstem" | tee -a $LF echo mask 1 brain tee -a log/preproc-sess.091223sbj01m_tp1.log mask 1 brain
set ProjectDir = `pwd` ; set ProjectDir = `pwd` pwd
set StartTime = `date` ; set StartTime = `date` date
foreach sess ( $SessList ) foreach sess ( /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 ) set sessid = `basename $sess` ; set sessid = `basename $sess` basename /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 set sessparent = `dirname $sess` ; set sessparent = `dirname $sess` dirname /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1
if ( -w . && $nolog != 1 ) then if ( -w . && 0 != 1 ) then mkdir -p log mkdir -p log set LF = $ProjectDir/log/preproc-$sessid-$fsd.log set LF = /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log rm -f $LF rm -f /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log else else
echo "preproc-sess" >> $LF echo preproc-sess echo $sessid >> $LF echo 091223sbj01m_tp1 echo $VERSION >> $LF echo FreeSurferEnv.csh 7.4.1 uname -a >> $LF uname -a date >> $LF date pwd >> $LF pwd echo $inputargs >> $LF echo -s 091223sbj01m_tp1 -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -debug echo "ProjectDir $ProjectDir" >> $LF echo ProjectDir /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA
if ( $DoTemplate ) then if ( 1 ) then set cmd = ( mktemplate-sess -s $sessid -d $sessparent -fsd $fsd -funcstem $instem ) set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f ) if ( $#RunListFile ) set cmd = ( $cmd -rlf $RunListFile ) ; if ( 0 ) set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -rlf ) if ( $nolog ) set cmd = ( $cmd -nolog ) ; if ( 0 ) set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -nolog ) if ( $UpdateOnly ) set cmd = ( $cmd -update ) ; if ( 1 ) set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update ) set cmd = ( mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update ) echo "$sessid Template -----------------------------" | & tee -a $LF echo 091223sbj01m_tp1 Template ----------------------------- tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log 091223sbj01m_tp1 Template ----------------------------- echo $cmd | & tee -a $LF echo mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update $cmd | & tee -a $LF mktemplate-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -funcstem f -update tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log Session: /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1
Lun 26 Feb 2024 18:46:29 CET Detected input format at nii.gz 091223sbj01m_tp1 Update not needed Run: 001 ---------------- Lun 26 Feb 2024 18:46:30 CET 091223sbj01m_tp1 001 Update not needed Run: 002 ---------------- Lun 26 Feb 2024 18:46:30 CET 091223sbj01m_tp1 002 Update not needed Run: 003 ---------------- Lun 26 Feb 2024 18:46:30 CET 091223sbj01m_tp1 003 Update not needed Lun 26 Feb 2024 18:46:30 CET mktemplate-sess completed if ( $status ) exit 1 ; if ( 0 ) exit 1 endif endif
if ( $DoReg ) then if ( 1 ) then set cmd = ( register-sess -s $sessid -d $sessparent -fsd $fsd -delete-dat ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat ) set cmd = ( $cmd -dof $RegDOF -$contrast ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold ) if ( $#RunListFile ) set cmd = ( $cmd -rlf $RunListFile ) ; if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -rlf ) if ( $PerRun ) set cmd = ( $cmd -per-run ) if ( 1 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run ) if ( $PerSess ) set cmd = ( $cmd -per-session ) if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -per-session ) if ( $nolog ) set cmd = ( $cmd -nolog ) ; if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -nolog ) if ( $UpdateOnly ) set cmd = ( $cmd -update ) ; if ( 1 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update ) if ( $UseB0DC ) set cmd = ( $cmd -b0dc ) if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -b0dc ) if ( $InitCoReg ) set cmd = ( $cmd -init-coreg ) if ( 1 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg ) if ( $InitFSL ) set cmd = ( $cmd -init-fsl ) if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -init-fsl ) if ( $InitSPM ) set cmd = ( $cmd -init-spm ) if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -init-spm ) if ( $InitHeader ) set cmd = ( $cmd -init-header ) if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -init-header ) if ( $#IntermediateFSD ) set cmd = ( $cmd -bbr-int $IntermediateFSD $IntermediateStem ) if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -bbr-int ) if ( $#BBRXopts ) set cmd = ( $cmd -bbr-xopts $BBRXopts ) if ( 0 ) set cmd = ( register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg -bbr-xopts ) echo "$sessid Registration -----------------------------" | & tee -a $LF echo 091223sbj01m_tp1 Registration ----------------------------- tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log 091223sbj01m_tp1 Registration ----------------------------- echo $cmd | & tee -a $LF echo register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg $cmd | & tee -a $LF register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
register-sess logfile is /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/register-sess.091223sbj01m_tp1.log
Lun 26 Feb 2024 18:46:30 CET
setenv SUBJECTS_DIR /Users/stefano/Desktop/MODAFINIL/MRI cd /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA /Applications/freesurfer/7.4.1/fsfast/bin/register-sess -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -delete-dat -dof 6 -bold -per-run -update -init-coreg
freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 Darwin IMACSTEFANO01.local 21.6.0 Darwin Kernel Version 21.6.0: Mon Dec 19 20:44:01 PST 2022; root:xnu-8020.240.18~2/RELEASE_X86_64 x86_64 Session: /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1
Lun 26 Feb 2024 18:46:30 CET /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 Run: 001 ---------------- Lun 26 Feb 2024 18:46:30 CET Update not needed Run: 002 ---------------- Lun 26 Feb 2024 18:46:30 CET Update not needed Run: 003 ---------------- Lun 26 Feb 2024 18:46:30 CET Update not needed Lun 26 Feb 2024 18:46:30 CET register-sess completed if ( $status ) exit 1 ; if ( 0 ) exit 1 endif endif
if ( $DoMask ) then if ( 1 ) then set cmd = ( mkbrainmask-sess -maskstem $maskstem ) set cmd = ( mkbrainmask-sess -maskstem brain ) set cmd = ( $cmd -fsd $fsd ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest ) set cmd = ( $cmd -s $sessid -d $sessparent ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA ) if ( $PerRun ) set cmd = ( $cmd -per-run ) if ( 1 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run ) if ( $PerSess ) set cmd = ( $cmd -per-session ) if ( 0 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -per-session ) if ( $#RunListFile ) set cmd = ( $cmd -rlf $RunListFile ) ; if ( 0 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -rlf ) if ( $nolog ) set cmd = ( $cmd -nolog ) ; if ( 0 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -nolog ) if ( $UpdateOnly ) set cmd = ( $cmd -update ) ; if ( 1 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update ) if ( $UseB0DC ) set cmd = ( $cmd -b0dc ) if ( 0 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update -b0dc ) if ( $RegDOF != 6 ) set cmd = ( $cmd -dof $RegDOF ) if ( 6 != 6 ) set cmd = ( mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update -dof 6 ) echo "$sessid Mask ------------------------" | & tee -a $LF echo 091223sbj01m_tp1 Mask ------------------------ tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log 091223sbj01m_tp1 Mask ------------------------ echo $cmd | & tee -a $LF echo mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update $cmd | & tee -a $LF mkbrainmask-sess -maskstem brain -fsd rest -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -per-run -update tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log
/Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1 Lun 26 Feb 2024 18:46:30 CET 091223sbj01m_tp1 Update not needed for session-level mask 091223sbj01m_tp1 Update not needed for run 001 mask 091223sbj01m_tp1 Update not needed for run 002 mask 091223sbj01m_tp1 Update not needed for run 003 mask 091223sbj01m_tp1 Update not needed for run 001 meanval 091223sbj01m_tp1 Update not needed for run 002 meanval 091223sbj01m_tp1 Update not needed for run 003 meanval Lun 26 Feb 2024 18:46:31 CET mkbrainmask-sess done if ( $status ) exit 1 ; if ( 0 ) exit 1 endif endif
if ( $DoMC ) then if ( 0 ) then
if ( $DoSTC ) then if ( 1 ) then set cmd = ( stc-sess -i $stcinstem -o $stcoutstem -ngroups $nSliceGroups ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 ) if ( $#SliceOrder ) set cmd = ( $cmd -so $SliceOrder ) if ( 1 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up ) if ( $#SliceDelayFile ) set cmd = ( $cmd -sdf $SliceDelayFile ) if ( 0 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -sdf ) set cmd = ( $cmd -s $sessid -d $sessparent -fsd $fsd ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest ) if ( $#RunListFile != 0 ) set cmd = ( $cmd -rlf $RunListFile ) ; if ( 0 != 0 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -rlf ) if ( $nolog ) set cmd = ( $cmd -nolog ) ; if ( 0 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -nolog ) if ( $UpdateOnly ) set cmd = ( $cmd -update ) ; if ( 1 ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update ) set cmd = ( stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update ) echo "$sessid STC -----------------------------" | & tee -a $LF echo 091223sbj01m_tp1 STC ----------------------------- tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log 091223sbj01m_tp1 STC ----------------------------- echo $cmd | & tee -a $LF echo stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update $cmd | & tee -a $LF stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log Lun 26 Feb 2024 18:46:31 CET /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA /Applications/freesurfer/7.4.1/fsfast/bin/stc-sess -i f -o f.up -ngroups 1 -so up -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -update FreeSurferEnv.csh 7.4.1 IMACSTEFANO01.local 091223sbj01m_tp1 ----------------- Lun 26 Feb 2024 18:46:31 CET -rw-r--r-- 1 stefano staff 19539533 8 Feb 09:29 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/f.up.nii.gz -rwx------ 1 stefano staff 19504393 7 Feb 08:32 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/f.nii.gz Update not needed -rw-r--r-- 1 stefano staff 19734829 8 Feb 09:29 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/002/f.up.nii.gz -rwx------ 1 stefano staff 19701816 7 Feb 08:32 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/002/f.nii.gz Update not needed -rw-r--r-- 1 stefano staff 20008834 8 Feb 09:29 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/003/f.up.nii.gz -rwx------ 1 stefano staff 19975502 7 Feb 08:32 /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/003/f.nii.gz Update not needed Started at Lun 26 Feb 2024 18:46:31 CET Ended at Lun 26 Feb 2024 18:46:31 CET stc-sess Done if ( $status ) exit 1 ; if ( 0 ) exit 1 endif endif
if ( $ToSurf ) then if ( 1 ) then set cmd = ( rawfunc2surf-sess -fwhm $fwhm ) set cmd = ( rawfunc2surf-sess -fwhm 0 ) set cmd = ( $cmd -s $sessid -d $sessparent -fsd $fsd ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest )
if ( "$hemi" == lh || "$hemi" == rh ) set cmd = ( $cmd -hemi $hemi ) if ( lhrh == lh || lhrh == rh ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -hemi lhrh ) if ( $subject == self ) set cmd = ( $cmd -self ) if ( fsaverage == self ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -self ) if ( $subject != self ) set cmd = ( $cmd -trgsubject $subject ) if ( fsaverage != self ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage ) if ( $#RunListFile != 0 ) set cmd = ( $cmd -rlf $RunListFile ) ; if ( 0 != 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -rlf ) if ( $#SliceOrder ) set cmd = ( $cmd -stc $SliceOrder ) if ( 1 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up ) if ( $#SliceDelayFile ) set cmd = ( $cmd -sdf $SliceDelayFile ) if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -sdf ) if ( $nolog ) set cmd = ( $cmd -nolog ) ; if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -nolog ) if ( $UpdateOnly ) set cmd = ( $cmd -update ) ; if ( 1 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update ) if ( $UseB0DC ) set cmd = ( $cmd -b0dc ) if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -b0dc ) if ( $RegDOF != 6 ) set cmd = ( $cmd -dof $RegDOF ) if ( 6 != 6 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -dof 6 ) if ( $PerRun ) set cmd = ( $cmd -per-run ) if ( 1 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run ) if ( $PerSess ) set cmd = ( $cmd -per-session ) if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run -per-session ) if ( $#ProjFrac ) set cmd = ( $cmd -projfrac $ProjFrac -expkey $ProjFracExpKey ) if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run -projfrac -expkey ) if ( $#volsurffwhm ) set cmd = ( $cmd -volsurffwhm $volsurffwhm ) if ( 0 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run -volsurffwhm ) if ( ! $UseCortexLabel ) set cmd = ( $cmd -no-cortex-label ) if ( ! 1 ) set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run -no-cortex-label ) echo "$sessid To Surface -----------------------------" | & tee -a $LF echo 091223sbj01m_tp1 To Surface ----------------------------- tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log 091223sbj01m_tp1 To Surface ----------------------------- echo $cmd | & tee -a $LF echo rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run $cmd | & tee -a $LF rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject fsaverage -stc up -update -per-run tee -a /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/log/preproc-091223sbj01m_tp1-rest.log instem fmcpr.up outstem fmcpr.up.sm0.fsaverage.hemi
1/1 091223sbj01m_tp1 1/1 091223sbj01m_tp1 001 lh --------- Lun 26 Feb 2024 18:46:32 CET /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 091223sbj01m_tp1 002 lh --------- Lun 26 Feb 2024 18:46:32 CET /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/002/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 091223sbj01m_tp1 003 lh --------- Lun 26 Feb 2024 18:46:32 CET /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/003/masks/brain.fsaverage.lh.pr.nii.gz does not need updating /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 091223sbj01m_tp1 001 rh --------- Lun 26 Feb 2024 18:46:32 CET /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 091223sbj01m_tp1 002 rh --------- Lun 26 Feb 2024 18:46:32 CET /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/002/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 091223sbj01m_tp1 003 rh --------- Lun 26 Feb 2024 18:46:32 CET /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/003/masks/brain.fsaverage.rh.pr.nii.gz does not need updating /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 091223sbj01m_tp1 001 lh --------- Lun 26 Feb 2024 18:46:32 CET ERROR: could not determine file for /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/001/fmcpr.up if ( $status ) exit 1 ; if ( 1 ) exit 1 exit 1
Il giorno 23 feb 2024, alle ore 18:32, Stefano Delli Pizzi sdellipizzi@gmail.com ha scritto:
Thank you! I have already sent it to you (probabile to Yujing) some days ago. Were they not okay? Could it be because I'm running data on MacOS? If you do preprocessing with -nomc, does it work on your dataset? I've tried it with three different databases. Regards Stefano
Il giorno 23 feb 2024, alle ore 17:32, Douglas N. Greve dgreve@mgh.harvard.edu ha scritto:
I cannot reproduce this locally. If you still want help, attach logs. You can also try running it with -debug as the first option and capture the copious terminal output.
On 2/6/2024 8:39 AM, Huang, Yujing wrote:
Not sure where this happened. Does it produce any log files that you can share? Maybe both logs with and without the -nomc option. Best, Yujing *From:*freesurfer-bounces@nmr.mgh.harvard.edufreesurfer-bounces@nmr.mgh.harvard.edu*On Behalf Of*Stefano Delli Pizzi *Sent:*Saturday, February 3, 2024 2:33 PM *To:*freesurfer@nmr.mgh.harvard.edu *Subject:*[Freesurfer] if: Expression Syntax - preproc-sess
* External Email - Use Caution *
Hello FreeSurfer Developers, I'm attempting to run preproc-sess with -nomc option preproc-sess -s subj -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -force if: Expression Syntax. This error occurred before to create the file with slice timing correction The error did not occur when I run the preproc-sess command line without the -nomc option. I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? FreeSurfer version: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 Platform: Darwin Kernel Version 21.6.0
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<rawfunc2surf-sess.txt><rawfunc2tal-sess.txt><preproc-sess.txt>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://secure-web.cisco.com/1VUSnXA-R8aMmePagKn7c5OTQLfckoVClegdJjwKCmfUWGs2PmA7bmD07BZN49m2NDPf6uY_ttaXKYvrRHqbtionPdA1hD4bPFRe8ncLlsGCIoKwpm0jKVmYXF0cxFDJregFcnAhbzjh0IIL2edgTk8-mrIrvpxwk59eF3EtsL63yrPSf1a5jds73CL5khujr1C1u6D9ZuDkiTdTEzzjXCyO-HRsPN5Qo_b4FOlImreAWWNLedmPC6yF7xR8YrwsCvsF1AXT8BkNxAS3loGM4aiQclLZTBluWIgsdcX1vU2J9pdPu04w5MGInUBJVyU0DIxpYhJWRSCv9ISY6kJCDNg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://www.massgeneralbrigham.org/complianceline https://secure-web.cisco.com/1AbSpKWS3Wqx7Evqkn45FQpmKLYzlJqjsawI-wNV89JRP3bYSoS9Pa46VtfqA11hbJ1fUXWyzev8Pq8r97MLe5y98_0BqkHUWsZez4ceth52YGxgy5b0zXgd6K1dvJJpgtq8tFdIN0bmRRYlqjQDU332e5bYwczTUiua28cmrAKBpxCBqa53zZnFq4mmLaLuN6wDUCXHTDdXIytDNq4qUnQ41q1OE5ifiF6YExWBGshcb-qhRyGPcvWwxeyKSLjUK4NknuIKToXDZ1zAcLxzi4Cl61mFwbW-ZZt9eZMo9Z334xOhDpAPhaI2zKzTtQ6c4_LrLUyQc2Ob-g9aLRFWJLw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://www.massgeneralbrigham.org/complianceline https://secure-web.cisco.com/1AbSpKWS3Wqx7Evqkn45FQpmKLYzlJqjsawI-wNV89JRP3bYSoS9Pa46VtfqA11hbJ1fUXWyzev8Pq8r97MLe5y98_0BqkHUWsZez4ceth52YGxgy5b0zXgd6K1dvJJpgtq8tFdIN0bmRRYlqjQDU332e5bYwczTUiua28cmrAKBpxCBqa53zZnFq4mmLaLuN6wDUCXHTDdXIytDNq4qUnQ41q1OE5ifiF6YExWBGshcb-qhRyGPcvWwxeyKSLjUK4NknuIKToXDZ1zAcLxzi4Cl61mFwbW-ZZt9eZMo9Z334xOhDpAPhaI2zKzTtQ6c4_LrLUyQc2Ob-g9aLRFWJLw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> .
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