You can try running mri_annotation2label with the --seg output. This will create a segmentation-style output in a "volume" format such that each vertex simply has a integer value. These unassigned vertices should be 0s (but check by loading the output as an overlay in tksurfer). Then run (the badly named) mri_cor2label, something like mri_cor2label --i seg.mgh --id 0 --l your.label --surf subject hemi doug

On 05/22/2012 02:12 PM, Sam Carpenter wrote:

Hey All,

I currently have a cortical parcellation with some unlabeled vertices in it. I'm wondering if anybody knows how to assign a series of unlabeled vertices to a single .label file. These vertices are copious and minute, trying to avoid several hundred 'click, save label as..' repetitions. Thanks in advance!

-Sam

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