External Email - Use Caution
Hello Experts,
I am currently using FreeSurfer version 6.0 to make manual edits to T1w images. In an earlier version 5.3, when GM has been erroneously removed, I used the "clone tool" to bring back voxels based on the original T1w. However, this tool seems to be not working in 6.0. Would you be able to help me troubleshoot this? If there is a better alternative to revert GM removal, please let me know!
Thank you for your help.
Hi David
does this not work in freeview? Can you describe to Ruopeng (ccd) exactly what you tried?
cheers Bruce On Mon, 19 Nov 2018, David S Lee wrote:
External Email - Use Caution
Hello Experts, I am currently using FreeSurfer version 6.0 to make manual edits to T1w images. In an earlier version 5.3, when GM has been erroneously removed, I used the "clone tool" to bring back voxels based on the original T1w. However, this tool seems to be not working in 6.0. Would you be able to help me troubleshoot this? If there is a better alternative to revert GM removal, please let me know!
Thank you for your help.
-- David S. Lee Research Specialist Center for Healthy Minds University of Wisconsin - Madison (608) 890-1115
External Email - Use Caution
Hello Bruce,
Thank you for the quick response.
I unchecked "do not draw on voxels in the range of" in the "Recon Edit" window, and I was able to get the clone to work nicely.
Thank you for your time!
David
On Mon, Nov 19, 2018 at 1:38 PM David S Lee david.s.lee@wisc.edu wrote:
Hello Experts,
I am currently using FreeSurfer version 6.0 to make manual edits to T1w images. In an earlier version 5.3, when GM has been erroneously removed, I used the "clone tool" to bring back voxels based on the original T1w. However, this tool seems to be not working in 6.0. Would you be able to help me troubleshoot this? If there is a better alternative to revert GM removal, please let me know!
Thank you for your help.
-- David S. Lee Research Specialist Center for Healthy Minds University of Wisconsin - Madison (608) 890-1115
glad to hear it worked out Bruce On Mon, 26 Nov 2018, David S Lee wrote:
External Email - Use Caution
Hello Bruce, Thank you for the quick response.
I unchecked "do not draw on voxels in the range of" in the "Recon Edit" window, and I was able to get the clone to work nicely.
Thank you for your time!
David
On Mon, Nov 19, 2018 at 1:38 PM David S Lee david.s.lee@wisc.edu wrote: Hello Experts, I am currently using FreeSurfer version 6.0 to make manual edits to T1w images. In an earlier version 5.3, when GM has been erroneously removed, I used the "clone tool" to bring back voxels based on the original T1w. However, this tool seems to be not working in 6.0. Would you be able to help me troubleshoot this? If there is a better alternative to revert GM removal, please let me know!
Thank you for your help.
-- David S. Lee Research Specialist Center for Healthy Minds University of Wisconsin - Madison (608) 890-1115
-- David S. Lee Research Specialist Center for Healthy Minds University of Wisconsin - Madison (608) 890-1115
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
David S Lee