External Email - Use Caution
Hello Freesurfers,
I've found the tutorial for editing wm.mgz (https://secure-web.cisco.com/1_VE6Du8jnccjig75E4hpWkJh1_YR3uP_xPzMfYusO6K011...).
I'm curious if there is a way to find the topological defects easily? Is there a text file in the stats folder, for example, which locates the coordinates of topological defects?
Thanks, Ken
Sent with [Proton Mail](https://secure-web.cisco.com/1KF2a2rKWu_5CevMXrlKZAUb4EzG3VQGOQnGyxhPlHF8KmS...) secure email.
If you are using 7.X, you can run tkmeditfv subject norm.mgz -defects This will load a "segmentation" with the defects in the volume, an annotation (surface segmentation) showing them on the surface, and a point set that you can go to any of the points.
On 2/21/2023 7:21 PM, KennethSPrice wrote:
External Email - Use Caution
Hello Freesurfers,
I've found the tutorial for editing wm.mgz (*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev... https://secure-web.cisco.com/1_VE6Du8jnccjig75E4hpWkJh1_YR3uP_xPzMfYusO6K011B35r7d-5c5wZYfw7XkeLM3lKcNiU_rGqkPuiBIAQxYjRBr4Cu4Gsc6ehkPfzFkw1RpcqwAhB4RZ2Rn1ePmINOb4_04y-Zbiu28L_hXc-EtGJvySa-lR003nMBVqjj5Je9swLPKPTGDM1YeYz86K6GWkueNpVuvi597SZytb6dA1RpkCenhwaTnrcQdz6OlG-vJtjDxAdux5VeqLd0S6roj7dZ-06nBMejaSRzdX2qf3JXpc-8MnkeA3iuWpEtwIp3MyfC6mEAdeoybcaH1Q2Cpa2Hu1lfDgdDLXIWoDw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTopologicalDefect_freeview).
I'm curious if there is a way to find the topological defects easily? Is there a text file in the stats folder, for example, which locates the coordinates of topological defects?
Thanks, Ken
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Amazing, thanks. Any place to see a list of more shortcuts like this? -Ken ------- Original Message ------- On Monday, March 6th, 2023 at 11:16 PM, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
If you are using 7.X, you can run tkmeditfv subject norm.mgz -defects This will load a "segmentation" with the defects in the volume, an annotation (surface segmentation) showing them on the surface, and a point set that you can go to any of the points.
On 2/21/2023 7:21 PM, KennethSPrice wrote:
External Email - Use Caution
Hello Freesurfers,
I've found the tutorial for editing wm.mgz ([MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1o61wofEs-DFLt8fuK70iZPARRsrKBsh1PQ6tpYo_9h_Q-3...)).
I'm curious if there is a way to find the topological defects easily? Is there a text file in the stats folder, for example, which locates the coordinates of topological defects?
Thanks, Ken
Sent with [Proton Mail](https://secure-web.cisco.com/1KF2a2rKWu_5CevMXrlKZAUb4EzG3VQGOQnGyxhPlHF8KmS...) secure email.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1xS9XXZCIrTMoVAdQeRWYavzUcw477M46gCROtZnul9cOd6...
not really. I usually add them to benefit my own work (I'm a user in addition to a developer). I'll try to write them down as I go alonjg
On 3/7/2023 5:14 PM, KennethSPrice wrote:
External Email - Use Caution
Amazing, thanks. Any place to see a list of more shortcuts like this? -Ken ------- Original Message ------- On Monday, March 6th, 2023 at 11:16 PM, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
If you are using 7.X, you can run tkmeditfv subject norm.mgz -defects This will load a "segmentation" with the defects in the volume, an annotation (surface segmentation) showing them on the surface, and a point set that you can go to any of the points.
On 2/21/2023 7:21 PM, KennethSPrice wrote:
External Email - Use Caution
Hello Freesurfers,
I've found the tutorial for editing wm.mgz (*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev... https://secure-web.cisco.com/1_VE6Du8jnccjig75E4hpWkJh1_YR3uP_xPzMfYusO6K011B35r7d-5c5wZYfw7XkeLM3lKcNiU_rGqkPuiBIAQxYjRBr4Cu4Gsc6ehkPfzFkw1RpcqwAhB4RZ2Rn1ePmINOb4_04y-Zbiu28L_hXc-EtGJvySa-lR003nMBVqjj5Je9swLPKPTGDM1YeYz86K6GWkueNpVuvi597SZytb6dA1RpkCenhwaTnrcQdz6OlG-vJtjDxAdux5VeqLd0S6roj7dZ-06nBMejaSRzdX2qf3JXpc-8MnkeA3iuWpEtwIp3MyfC6mEAdeoybcaH1Q2Cpa2Hu1lfDgdDLXIWoDw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTopologicalDefect_freeview).
I'm curious if there is a way to find the topological defects easily? Is there a text file in the stats folder, for example, which locates the coordinates of topological defects?
Thanks, Ken
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas N. Greve -
KennethSPrice