If you are using 7.X, you can run tkmeditfv subject norm.mgz -defects This will load a "segmentation" with the defects in the volume, an annotation (surface segmentation) showing them on the surface, and a point set that you can go to any of the points.
On 2/21/2023 7:21 PM, KennethSPrice wrote:
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Hello Freesurfers,
I've found the tutorial for editing wm.mgz (*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev... https://secure-web.cisco.com/1_VE6Du8jnccjig75E4hpWkJh1_YR3uP_xPzMfYusO6K011B35r7d-5c5wZYfw7XkeLM3lKcNiU_rGqkPuiBIAQxYjRBr4Cu4Gsc6ehkPfzFkw1RpcqwAhB4RZ2Rn1ePmINOb4_04y-Zbiu28L_hXc-EtGJvySa-lR003nMBVqjj5Je9swLPKPTGDM1YeYz86K6GWkueNpVuvi597SZytb6dA1RpkCenhwaTnrcQdz6OlG-vJtjDxAdux5VeqLd0S6roj7dZ-06nBMejaSRzdX2qf3JXpc-8MnkeA3iuWpEtwIp3MyfC6mEAdeoybcaH1Q2Cpa2Hu1lfDgdDLXIWoDw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTopologicalDefect_freeview).
I'm curious if there is a way to find the topological defects easily? Is there a text file in the stats folder, for example, which locates the coordinates of topological defects?
Thanks, Ken
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